Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3914g00009 ATGATCCTCTCTATGGTTCGATCACTTCAGGCAGCCAAGCTTCAAACTGGGGTACGTGCAAAATATGGGAAGGATAATGGAAATATGAAAAATAATTGTGCAGATGATAATTCGGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAAAGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACTAAATCTTCAGAAATGTAATTCTTCACTTGCAATGAAGAGAGCGGAAACAACCGCGTGTGCATCTAGAGCTTCCACTGTTTCCAAAGATTATTCTGGAGATGAAGTACAAAAGCAGCAAGAAGTGTCGCAACTGCCAAGTTCGAGGGAGAGTACAGGCAGCCACGAAAGTTTGTCGGGCAAAGGGGATTATGAGTCCAACTCTGTTTCAGAGTGTGAAATCCGTTGGGAAGACCTTCAATTAAGAGAGGAGATTGGACAAGGTTCTTATGCAACTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAGTCAAGGTTTATTTTGGGAACGGATACACAGAGGAGACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTACTACTTTTCATGGGAGCAGTATATTCACCGGAAAGGCTTGCCATTGTTACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAAATATACATAGGAACAATCAGACATTAGACATCAGAAGACGTCTAAGGGTGGCTCTTGATGTTGCTAAAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATCGAGATCTGAAGTCTTCCAACCTGCTAGTAGATAAAAACTGGACTGTAAAGGTTGGAGATTTTGGCCTATCTCGGTTGAAGGATACAACTTTATTGAATACGAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAAGTCCTTAGAAATGAACCTTCCAATGAGAAGTCTGATGTATTCAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCCTGGAAAAATTTGAATTCCTTACAGGTTGTTGGAGTCGTAGGCTTTATGGACAGACGACTAGACCTTCCAGAGGACCTTGATCCCCATGTTGCCTCCATCATCGATGATTGCTGGCAAAGTGATCCAGAGCGACGCCCATCATTTGAAGAGCTGATCCAGAGAACGTTGTTCCTTGTTAACAGAGTAACAGCAGTGTCAATTAGGAGAATTGCAGAATCCTAA 1257 0.4137 MILSMVRSLQAAKLQTGVRAKYGKDNGNMKNNCADDNSGSNRMNYENDSSGGLVPLKGYQDVVNGADKELNLQKCNSSLAMKRAETTACASRASTVSKDYSGDEVQKQQEVSQLPSSRESTGSHESLSGKGDYESNSVSECEIRWEDLQLREEIGQGSYATVYHGIWNGSDVAVKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSPERLAIVTELLPRGSLFKNIHRNNQTLDIRRRLRVALDVAKGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDTTLLNTKSGRGTPQWMAPEVLRNEPSNEKSDVFSFGVILWELMTQSIPWKNLNSLQVVGVVGFMDRRLDLPEDLDPHVASIIDDCWQSDPERRPSFEELIQRTLFLVNRVTAVSIRRIAES 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3914g00009 418 Gene3D Phosphorylase Kinase; domain 1 141 225 - -
Vium3914g00009 418 SMART serkin_6 148 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3914g00009 418 SUPERFAMILY Protein kinase-like (PK-like) 135 407 IPR011009 -
Vium3914g00009 418 CDD STKc_MAP3K-like 154 399 - -
Vium3914g00009 418 ProSiteProfiles Protein kinase domain profile. 148 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3914g00009 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Vium3914g00009 418 FunFam PAS domain-containing protein tyrosine kinase family protein 226 414 - -
Vium3914g00009 418 ProSitePatterns Protein kinases ATP-binding region signature. 154 175 IPR017441 GO:0005524
Vium3914g00009 418 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 67 401 - -
Vium3914g00009 418 FunFam Serine/threonine-protein kinase isoform 1 139 226 - -
Vium3914g00009 418 Gene3D Transferase(Phosphotransferase) domain 1 227 408 - -
Vium3914g00009 418 Pfam Protein tyrosine and serine/threonine kinase 148 398 IPR001245 GO:0004672|GO:0006468
Vium3914g00009 418 MobiDBLite consensus disorder prediction 93 135 - -
Vium3914g00009 418 PRINTS Tyrosine kinase catalytic domain signature 371 393 IPR001245 GO:0004672|GO:0006468
Vium3914g00009 418 PRINTS Tyrosine kinase catalytic domain signature 308 318 IPR001245 GO:0004672|GO:0006468
Vium3914g00009 418 PRINTS Tyrosine kinase catalytic domain signature 222 235 IPR001245 GO:0004672|GO:0006468
Vium3914g00009 418 PRINTS Tyrosine kinase catalytic domain signature 261 279 IPR001245 GO:0004672|GO:0006468
Vium3914g00009 418 PRINTS Tyrosine kinase catalytic domain signature 327 349 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3914g00009 Vium-Chr3914 42406 46548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3914g00009 139 406 MAP Kinase Kinase Kinase AT4G23050 72.761 5.64e-145 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium3914g00009 PK_Tyr_Ser-Thr 1.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3914g00009 - - vum:124836158 816.224