Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3914g00008 ATGATCCTCTCTATGGTTCGATCACTTCAGGCAGCCAAGCTTCAAACTGGGGTACGTGCAAAATATGGGAAGGATAATGGAAATATGAAAAATAATTGTGCAGATGATAATTCGGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAAAGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACTAAATCTTCAGAAATGTAATTCTTCACTTGCAATGAAGAGAGCGGAAACAACCGCGTGTGCATCTAGAGCTTCCACTGTTTCCAAAGATTATTCTGAGGCAACGACTGTGGTGACAGGAGATGAAGTACAAAAGCAGCAAGAAGTGTCGCAACTGCCAAGTTCGAGGGAGAGTACAGGCAGCCACGAAAGTTTGTCGGGCAAAGGGGATTATGAGTCCAACTCTGTTTCAGAGTGTGAAATCCGTTGGGAAGACCTTCAATTAAGAGAGGAGATTGGACAAGGTTCTTATGCAACTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAGTCAAGGTTTATTTTGGGAACGGATACACAGAGGAGACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTACTACTTTTCATGGGAGCAGTATATTCACCGGAAAGGCTTGCCATTGTTACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAAATATACATAGGAACAATCAGACATTAGACATCAGAAGACGTCTAAGGGTGGCTCTTGATGTTGCTAAAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATCGAGATCTGAAGTCTTCCAACCTGCTAGTAGATAAAAACTGGACTGTAAAGGTTGGAGATTTTGGCCTATCTCGGTTGAAGGATACAACTTTATTGAATACGAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAAGTCCTTAGAAATGAACCTTCCAATGAGAAGTCTGATGTATTCAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCCTGGAAAAATTTGAATTCCTTACAGGTTGTTGGAGTCGTAGGCTTTATGGACAGACGACTAGACCTTCCAGAGGACCTTGATCCCCATGTTGCCTCCATCATCGATGATTGCTGGCAAAGTGATCCAGAGCGACGCCCATCATTTGAAGAGCTGATCCAGAGAACGTTGTTCCTTGTTAACAGAGTAACAGCAGTGTCAATTAGGAGAATTGCAGAATCCTAA 1278 0.4163 MILSMVRSLQAAKLQTGVRAKYGKDNGNMKNNCADDNSGSNRMNYENDSSGGLVPLKGYQDVVNGADKELNLQKCNSSLAMKRAETTACASRASTVSKDYSEATTVVTGDEVQKQQEVSQLPSSRESTGSHESLSGKGDYESNSVSECEIRWEDLQLREEIGQGSYATVYHGIWNGSDVAVKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSPERLAIVTELLPRGSLFKNIHRNNQTLDIRRRLRVALDVAKGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDTTLLNTKSGRGTPQWMAPEVLRNEPSNEKSDVFSFGVILWELMTQSIPWKNLNSLQVVGVVGFMDRRLDLPEDLDPHVASIIDDCWQSDPERRPSFEELIQRTLFLVNRVTAVSIRRIAES 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3914g00008 425 CDD STKc_MAP3K-like 161 406 - -
Vium3914g00008 425 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 68 408 - -
Vium3914g00008 425 ProSitePatterns Protein kinases ATP-binding region signature. 161 182 IPR017441 GO:0005524
Vium3914g00008 425 Pfam Protein tyrosine and serine/threonine kinase 155 405 IPR001245 GO:0004672|GO:0006468
Vium3914g00008 425 ProSiteProfiles Protein kinase domain profile. 155 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3914g00008 425 PRINTS Tyrosine kinase catalytic domain signature 268 286 IPR001245 GO:0004672|GO:0006468
Vium3914g00008 425 PRINTS Tyrosine kinase catalytic domain signature 334 356 IPR001245 GO:0004672|GO:0006468
Vium3914g00008 425 PRINTS Tyrosine kinase catalytic domain signature 229 242 IPR001245 GO:0004672|GO:0006468
Vium3914g00008 425 PRINTS Tyrosine kinase catalytic domain signature 378 400 IPR001245 GO:0004672|GO:0006468
Vium3914g00008 425 PRINTS Tyrosine kinase catalytic domain signature 315 325 IPR001245 GO:0004672|GO:0006468
Vium3914g00008 425 Gene3D Transferase(Phosphotransferase) domain 1 234 415 - -
Vium3914g00008 425 FunFam PAS domain-containing protein tyrosine kinase family protein 233 421 - -
Vium3914g00008 425 SUPERFAMILY Protein kinase-like (PK-like) 142 414 IPR011009 -
Vium3914g00008 425 MobiDBLite consensus disorder prediction 107 142 - -
Vium3914g00008 425 FunFam Serine/threonine-protein kinase isoform 1 146 233 - -
Vium3914g00008 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Vium3914g00008 425 SMART serkin_6 155 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3914g00008 425 Gene3D Phosphorylase Kinase; domain 1 148 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3914g00008 Vium-Chr3914 42406 46548 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3914g00008 146 413 MAP Kinase Kinase Kinase AT4G23050 72.761 5.21e-145 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium3914g00008 PK_Tyr_Ser-Thr 1.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3914g00008 - - vum:124836158 809.29