Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3914g00007 ATGATCCTCTCTATGGTTCGATCACTTCAGGCAGCCAAGCTTCAAACTGGGGTACGTGCAAAATATGGGAAGGATAATGGAAATATGAAAAATAATTGTGCAGATGATAATTCGGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAAAGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACTAAATCTTCAGAAATGTAATTCTTCACTTGCAATGAAGAGAGCGGAAACAACCGCGTGTGCATCTAGAGCTTCCACTGTTTCCAAAGATTATTCTGAGGCAACGACTGTGGTGACAGGAGATGAAGTACAAAAGCAGCAAGAAGTGTCGCAACTGCCAAGTTCGAGGGAGAGTACAGGCAGCCACGAAAGTTTGTCGGGCAAAGGGGATTATGAGTCCAACTCTGTTTCAGAGTGTGAAATCCGTTGGGAAGACCTTCAATTAAGAGAGGAGATTGGACAAGGTTCTTATGCAACTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAGTCAAGGTTTATTTTGGGAACGGATACACAGAGGAGACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTACTACTTTTCATGGGAGCAGTATATTCACCGGAAAGGCTTGCCATTGTTACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAAATATACATAGGAACAATCAGACATTAGACATCAGAAGACGTCTAAGGGTGGCTCTTGATGTTGCTAAAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATCGAGATCTGAAGTCTTCCAACCTGCTAGTAGATAAAAACTGGACTGTAAAGGTTGGAGATTTTGGCCTATCTCGGTTGAAGGATACAACTTTATTGAATACGAAATCTGGGAGAGGCACCGTAATGACGTCACTCGGTTTTTTCATTTTTAAATATGAAACTGCTGATCTGAGCAGCTGGCAACTCCTCAATGGATGGCCCCTGAAGTCCTTAGAAATGAACCTTCCAATGAGAAGTTGTTGGAGTCGTAGGCTTTATGGACAGACGACTAGACCTTCCAGAGGACCTTGA 1119 0.412 MILSMVRSLQAAKLQTGVRAKYGKDNGNMKNNCADDNSGSNRMNYENDSSGGLVPLKGYQDVVNGADKELNLQKCNSSLAMKRAETTACASRASTVSKDYSEATTVVTGDEVQKQQEVSQLPSSRESTGSHESLSGKGDYESNSVSECEIRWEDLQLREEIGQGSYATVYHGIWNGSDVAVKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSPERLAIVTELLPRGSLFKNIHRNNQTLDIRRRLRVALDVAKGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDTTLLNTKSGRGTVMTSLGFFIFKYETADLSSWQLLNGWPLKSLEMNLPMRSCWSRRLYGQTTRPSRGP 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3914g00007 372 FunFam Serine/threonine-protein kinase isoform 1 146 233 - -
Vium3914g00007 372 Gene3D Phosphorylase Kinase; domain 1 148 232 - -
Vium3914g00007 372 ProSitePatterns Protein kinases ATP-binding region signature. 161 182 IPR017441 GO:0005524
Vium3914g00007 372 SUPERFAMILY Protein kinase-like (PK-like) 136 316 IPR011009 -
Vium3914g00007 372 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 68 317 - -
Vium3914g00007 372 MobiDBLite consensus disorder prediction 107 142 - -
Vium3914g00007 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Vium3914g00007 372 Pfam Protein tyrosine and serine/threonine kinase 155 305 IPR001245 GO:0004672|GO:0006468
Vium3914g00007 372 SMART serkin_6 155 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3914g00007 372 Gene3D Transferase(Phosphotransferase) domain 1 233 323 - -
Vium3914g00007 372 ProSiteProfiles Protein kinase domain profile. 155 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3914g00007 Vium-Chr3914 42406 46548 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3914g00007 146 316 MAP Kinase Kinase Kinase AT4G23050 71.345 4.47e-83 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium3914g00007 PK_Tyr_Ser-Thr 6.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3914g00007 - - vum:124836158 597.045