Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3914g00006 ATGTGCTCTCACTGGCTGACAATCAAGGCCAATTTCAGTCAATATTTCACTTTTTATTTTCAAATTTCGAAAAAGTTACCTCTGCAAGTTATTCTTTTGTTTAGATTGCTTTTGAGCCAAACCTATTTCCATTTCAGGAATCACGCGGCCGAAACTCTGTATGGATGGAAAGACCACGAAATCATTGGCCAAAGTGTAACTAAAATCCTAACTGCTCAGGAAAATTATGTATCTCTACAAAAAATTCTGGAAAGGGTGGTTTCAGGAGTTCCATGGTCTGGGAAGTTTCCTTTCAAAAAGAAATCTGGTGAAGTAATTATGGCATTGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTTGTTGGTGTTATAACTGTTTCAAGTGATGCGGCTATATTAAAATGTACAAATTCAGAAAATCAAACATACAAATCTGCTAACAATGGCCAACCTGGAGTAAGGAGGTTAAACTTTAAAAGAATTCAGTGGCCTCCACGACCAACGATTGCACCAATGCCGCAGATTGCTTCATCTGTTTCCAATCTGGCATCAAAGCTTCTCCCACTGCTGCATAGTACTGATGACACAGTTTCCAAGAAGACTTCGACAGATGCTGTCGCAGGTGATGAAAAGCTAGAGAAGCGTGGCATATATGAAACAAAACCTAATTCCAGACATTTCCGTAAAGAAAACACAATTGTCACGGAGGCCTCTGAGGAGAATGAGTCTACTGCAGAATTTGGCCAACCTTCTAAAATTGCAGCCAAGCTTCAAACTGGGGTACGTGCAAAATATGGGAAGGATAATGGAAATATGAAAAATAATTGTGCAGATGATAATTCGGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAAAGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACTAAATCTTCAGAAATGTAATTCTTCACTTGCAATGAAGAGAGCGGAAACAACCGCGTGTGCATCTAGAGCTTCCACTGTTTCCAAAGATTATTCTGGTAAGCCTCTCTCTGGGGAGTGGTGTGAATTTTTGGATTCTCCCATTCCCCATACCCATTGTTAA 1101 0.3933 MCSHWLTIKANFSQYFTFYFQISKKLPLQVILLFRLLLSQTYFHFRNHAAETLYGWKDHEIIGQSVTKILTAQENYVSLQKILERVVSGVPWSGKFPFKKKSGEVIMALVTKTPLYEDGELVGVITVSSDAAILKCTNSENQTYKSANNGQPGVRRLNFKRIQWPPRPTIAPMPQIASSVSNLASKLLPLLHSTDDTVSKKTSTDAVAGDEKLEKRGIYETKPNSRHFRKENTIVTEASEENESTAEFGQPSKIAAKLQTGVRAKYGKDNGNMKNNCADDNSGSNRMNYENDSSGGLVPLKGYQDVVNGADKELNLQKCNSSLAMKRAETTACASRASTVSKDYSGKPLSGEWCEFLDSPIPHTHC 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3914g00006 366 ProSiteProfiles PAS repeat profile. 47 90 IPR000014 -
Vium3914g00006 366 NCBIfam PAS domain S-box protein 42 130 IPR000014 -
Vium3914g00006 366 Pfam PAS domain 45 130 IPR000014 -
Vium3914g00006 366 CDD PAS 47 130 IPR000014 -
Vium3914g00006 366 MobiDBLite consensus disorder prediction 266 285 - -
Vium3914g00006 366 SUPERFAMILY PYP-like sensor domain (PAS domain) 40 130 IPR035965 -
Vium3914g00006 366 Gene3D PAS domain 40 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3914g00006 Vium-Chr3914 31006 32809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3914g00006 45 274 MAP Kinase Kinase Kinase AT4G23050 36.614 6.80e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3914g00006 - - vum:124836163 719.924