Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3914g00005 ATGTGCTCTCACTGGCTGACAATCAAGGCCAATTTCAGTCAATATTTCACTTTTTATTTTCAAATTTCGAAAAAGTTACCTCTGCAAGTTATTCTTTTGTTTAGATTGCTTTTGAGCCAAACCTATTTCCATTTCAGGAATCACGCGGCCGAAACTCTGTATGGATGGAAAGACCACGAAATCATTGGCCAAAGTGTAACTAAAATCCTAACTGCTCAGGAAAATTATGTATCTCTACAAAAAATTCTGGAAAGGGTGGTTTCAGGAGTTCCATGGTCTGGGAAGTTTCCTTTCAAAAAGAAATCTGGTGAAGTAATTATGGCATTGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTTGTTGGTGTTATAACTGTTTCAAGTGATGCGGCTATATTAAAATGTACAAATTCAGAAAATCAAACATACAAATCTGCTAACAATGGCCAACCTGGAGTAAGGAGGTTAAACTTTAAAAGAATTCAGTGGCCTCCACGACCAACGATTGCACCAATGCCGCAGATTGCTTCATCTGTTTCCAATCTGGTTCTCATTAGTGCATCAAAGCTTCTCCCACTGCTGCATAGTACTGATGACACAGTTTCCAAGAAGACTTCGACAGATGCTGTCGCAGGTGATGAAAAGCTAGAGAAGCGTGGCATATATGAAACAAAACCTAATTCCAGACATTTCCGTAAAGAAAACACAATTGTCACGGAGGCCTCTGAGGAGAATGAGTCTACTGCAGAATTTGGCCAACCTTCTAAAATTGCAGCCAAGCTTCAAACTGGGGTACGTGCAAAATATGGGAAGGATAATGGAAATATGAAAAATAATTGTGCAGATGATAATTCGGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAAAGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACTAAATCTTCAGAAATGTAATTCTTCACTTGCAATGAAGAGAGCGGAAACAACCGCGTGTGCATCTAGAGCTTCCACTGTTTCCAAAGATTATTCTGGTAAGCCTCTCTCTGGGGAGTGGTGTGAATTTTTGGATTCTCCCATTCCCCATACCCATTGTTAA 1113 0.3926 MCSHWLTIKANFSQYFTFYFQISKKLPLQVILLFRLLLSQTYFHFRNHAAETLYGWKDHEIIGQSVTKILTAQENYVSLQKILERVVSGVPWSGKFPFKKKSGEVIMALVTKTPLYEDGELVGVITVSSDAAILKCTNSENQTYKSANNGQPGVRRLNFKRIQWPPRPTIAPMPQIASSVSNLVLISASKLLPLLHSTDDTVSKKTSTDAVAGDEKLEKRGIYETKPNSRHFRKENTIVTEASEENESTAEFGQPSKIAAKLQTGVRAKYGKDNGNMKNNCADDNSGSNRMNYENDSSGGLVPLKGYQDVVNGADKELNLQKCNSSLAMKRAETTACASRASTVSKDYSGKPLSGEWCEFLDSPIPHTHC 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3914g00005 370 ProSiteProfiles PAS repeat profile. 47 90 IPR000014 -
Vium3914g00005 370 Gene3D PAS domain 40 135 - -
Vium3914g00005 370 SUPERFAMILY PYP-like sensor domain (PAS domain) 40 130 IPR035965 -
Vium3914g00005 370 CDD PAS 47 130 IPR000014 -
Vium3914g00005 370 NCBIfam PAS domain S-box protein 42 130 IPR000014 -
Vium3914g00005 370 Pfam PAS domain 45 130 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3914g00005 Vium-Chr3914 31006 32813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3914g00005 45 278 MAP Kinase Kinase Kinase AT4G23050 36.187 1.45e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3914g00005 - - vum:124836163 731.865