Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3914g00004 ATGAACGGCTTTGAGGAGAGAGAAACTACAGCGTTCCGAGCTCTGGCGGATCGGTGCCGGAGCCTCGAGGAGAAGCAGGCCAAGTTGAAGGAGGAATTCGATGAGCTACTGCAGAAGAAGCTCACAGTCCGGCACGATAACGATAACAATAACGAGGTCATTGCTGATTCAACAACCCTCGGTTTTCTCCCCGGTTACTTCTCCAGAAGTCCCTACGCAACCCTGCTGAAATGTATGGGCCACGCCGTTCACGTCGTCAGAGTTCCCTCCGCTGAGATCGTGTACTGGAATCACGCGGCCGAAACTCTGTATGGATGGAAAGACCACGAAATCATTGGCCAAAGTGTAACTAAAATCCTAACTGCTCAGGAAAATTATGTATCTCTACAAAAAATTCTGGAAAGGGTGGTTTCAGGAGTTCCATGGTCTGGGAAGTTTCCTTTCAAAAAGAAATCTGGTGAAGTAATTATGGCATTGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTTGTTGGTGTTATAACTGTTTCAAGTGATGCGGCTATATTAAAATGTACAAATTCAGAAAATCAAACATACAAATCTGCTAACAATGGCCAACCTGGAGTAAGGAGGTTAAACTTTAAAAGAATTCAGTGGCCTCCACGACCAACGATTGCACCAATGCCGCAGATTGCTTCATCTGTTTCCAATCTGGTTCTCATTAGTGCATCAAAGCTTCTCCCACTGCTGCATAGTACTGATGACACAGTTTCCAAGAAGACTTCGACAGATGCTGTCGCAGGTGATGAAAAGCTAGAGAAGCGTGGCATATATGAAACAAAACCTAATTCCAGACATTTCCGTAAAGAAAACACAATTGTCACGGAGGCCTCTGAGGAGAATGAGTCTACTGCAGAATTTGGCCAACCTTCTAAAATTGCAGCCAAGCTTCAAACTGGGGTACGTGCAAAATATGGGAAGGATAATGGAAATATGAAAAATAATTGTGCAGATGATAATTCGGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAAAGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACTAAATCTTCAGAAATGTAATTCTTCACTTGCAATGAAGAGAGCGGAAACAACCGCGTGTGCATCTAGAGCTTCCACTGTTTCCAAAGATTATTCTGAGGCAACGACTGTGGTGACAGGAGATGAAGTACAAAAGCAGCAAGAAGTGTCGCAACTGCCAAGTTCGAGGGAGAGTACAGGCAGCCACGAAAGTTTGTCGGGCAAAGGGGATTATGAGTCCAACTCTGTTTCAGAGTGTGAAATCCGTTGGGAAGACCTTCAATTAAGAGAGGAGATTGGACAAGGTAATGAATTCCATTATTATGCATTTTATAGTTCCTCTATGTTAANGCTTTTGTACTTCATCTCCTGTTACCACAGTCGTTGCCTCTGGTTCCAATTTCTTAGTTTCGGCCGCGTGATTCCTGAAATGGAAATAGGTTTGGCTCAAAAGCAATCTAAACAAAAGAATAACTTGCAGAGGCTGACAATCAAGGCCAATTTCAGTCAATATTTCACTTTTTATTTTCAAATTTCGAAAAAGTTACCTCTGCAAGTTATTCTTTTGTTTAGATTGCTTTTGAGCCAAACCTATTTCCATTTCAGGAATCACGCGGCCGAAACTCTGTATGGATGGAAAGACCACGAAATCATTGGCCAAAGTGTAACTAAAATCCTAAATGCTCAGGAAAATTATGTATCTCTACAAAAAATTCTGGAAAGGGTGGTTTCAGGAGTTCCATGGTCTGGGAAGTTTCCTTTCAAAAAGAAATCTGGTGAAGTAATTATGGCATTGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTTGTTGGTGTTATAACTGTTTCAAGTGATGCGGCTATATTAAAATGTACAAATTCAGAAAATCAAACATACAAATCTGCTAACAATGGCCAACCTGGAGTAAGGAGGTTAAACTTTAAAAGAATTCAGTGGCCTCCACGACCAACGATTGCACCAATGCCGCAGATTGCTTCATCTGTTTCCAATCTGGTTCTCATTAGTGCATCAAAGCTTCTCCCACTGCTGCATAGTACTGATGACACAGTTTCCAAGAAGACTTCGACAGATGCTGTCGCAGGTGATGAAAAGCTAGAGAAGCGTGGCATATATGAAACAAAACCTAATTCCAGACATTTCCGTAAAGAAAACACAATTGTCACGGAGGCCTCTGAGGAGAATGAGTCTACTGCAGAATTTGGCCAACCTTCTAAAATTGCAGCCAAGCTTCAAACTGGGGTACGTGCAAAATATGGGAAGGATAATGGAAATATGAAAAATAATTGTGCAGATGATAATTCGGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAAAGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACTAAATCTTCAGAAATGTAATTCTTCACTTGCAATGAAGAGAGCGGAAACAACCGCGTGTGCATCTAGAGCTTCCACTGTTTCCAAAGATTATTCTGGAGATGAAGTACAAAAGCAGCAAGAAGTGTCGCAACTGCCAAGTTCGAGGGAGAGTACAGGCAGCCACGAAAGTTTGTCGGGCAAAGGGGATTATGAGTCCAACTCTGTTTCAGAGTGTGAAATCCGTTGGGAAGACCTTCAATTAAGAGAGGAGATTGGACAAGGTTCTTATGCAACTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAGTCAAGGTTTATTTTGGGAACGGATACACAGAGGAGACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTACTACTTTTCATGGGAGCAGTATATTCACCGGAAAGGCTTGCCATTGTTACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAAATATACATAGGAACAATCAGACATTAGACATCAGAAGACGTCTAAGGGTGGCTCTTGATGTTGCTAAAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATCGAGATCTGAAGTCTTCCAACCTGCTAGTAGATAAAAACTGGACTGTAAAGGTTGGAGATTTTGGCCTATCTCGGTTGAAGGATACAACTTTATTGAATACGAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAAGTCCTTAGAAATGAACCTTCCAATGAGAAGTCTGATGTATTCAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCCTGGAAAAATTTGAATTCCTTACAGGTTGTTGGAGTCGTAGGCTTTATGGACAGACGACTAGACCTTCCAGAGGACCTTGATCCCCATGTTGCCTCCATCATCGATGATTGCTGGCAAAGTGATCCAGAGCGACGCCCATCATTTGAAGAGCTGATCCAGAGAACGTTGTTCCTTGTTAACAGAGTAACAGCAGTGTCAATTAGGAGAATTGCAGAATCCTAA 3549 0.4156 MNGFEERETTAFRALADRCRSLEEKQAKLKEEFDELLQKKLTVRHDNDNNNEVIADSTTLGFLPGYFSRSPYATLLKCMGHAVHVVRVPSAEIVYWNHAAETLYGWKDHEIIGQSVTKILTAQENYVSLQKILERVVSGVPWSGKFPFKKKSGEVIMALVTKTPLYEDGELVGVITVSSDAAILKCTNSENQTYKSANNGQPGVRRLNFKRIQWPPRPTIAPMPQIASSVSNLVLISASKLLPLLHSTDDTVSKKTSTDAVAGDEKLEKRGIYETKPNSRHFRKENTIVTEASEENESTAEFGQPSKIAAKLQTGVRAKYGKDNGNMKNNCADDNSGSNRMNYENDSSGGLVPLKGYQDVVNGADKELNLQKCNSSLAMKRAETTACASRASTVSKDYSEATTVVTGDEVQKQQEVSQLPSSRESTGSHESLSGKGDYESNSVSECEIRWEDLQLREEIGQGNEFHYYAFYSSSMLXLLYFISCYHSRCLWFQFLSFGRVIPEMEIGLAQKQSKQKNNLQRLTIKANFSQYFTFYFQISKKLPLQVILLFRLLLSQTYFHFRNHAAETLYGWKDHEIIGQSVTKILNAQENYVSLQKILERVVSGVPWSGKFPFKKKSGEVIMALVTKTPLYEDGELVGVITVSSDAAILKCTNSENQTYKSANNGQPGVRRLNFKRIQWPPRPTIAPMPQIASSVSNLVLISASKLLPLLHSTDDTVSKKTSTDAVAGDEKLEKRGIYETKPNSRHFRKENTIVTEASEENESTAEFGQPSKIAAKLQTGVRAKYGKDNGNMKNNCADDNSGSNRMNYENDSSGGLVPLKGYQDVVNGADKELNLQKCNSSLAMKRAETTACASRASTVSKDYSGDEVQKQQEVSQLPSSRESTGSHESLSGKGDYESNSVSECEIRWEDLQLREEIGQGSYATVYHGIWNGSDVAVKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSPERLAIVTELLPRGSLFKNIHRNNQTLDIRRRLRVALDVAKGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDTTLLNTKSGRGTPQWMAPEVLRNEPSNEKSDVFSFGVILWELMTQSIPWKNLNSLQVVGVVGFMDRRLDLPEDLDPHVASIIDDCWQSDPERRPSFEELIQRTLFLVNRVTAVSIRRIAES 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3914g00004 1182 ProSiteProfiles PAS repeat profile. 563 606 IPR000014 -
Vium3914g00004 1182 NCBIfam PAS domain S-box protein 559 646 IPR000014 -
Vium3914g00004 1182 NCBIfam PAS domain S-box protein 90 180 IPR000014 -
Vium3914g00004 1182 ProSiteProfiles PAS repeat profile. 68 140 IPR000014 -
Vium3914g00004 1182 MobiDBLite consensus disorder prediction 406 439 - -
Vium3914g00004 1182 MobiDBLite consensus disorder prediction 794 812 - -
Vium3914g00004 1182 MobiDBLite consensus disorder prediction 320 350 - -
Vium3914g00004 1182 FunFam Serine/threonine-protein kinase isoform 1 903 990 - -
Vium3914g00004 1182 Gene3D PAS domain 68 201 - -
Vium3914g00004 1182 PRINTS Tyrosine kinase catalytic domain signature 1025 1043 IPR001245 GO:0004672|GO:0006468
Vium3914g00004 1182 PRINTS Tyrosine kinase catalytic domain signature 1072 1082 IPR001245 GO:0004672|GO:0006468
Vium3914g00004 1182 PRINTS Tyrosine kinase catalytic domain signature 1135 1157 IPR001245 GO:0004672|GO:0006468
Vium3914g00004 1182 PRINTS Tyrosine kinase catalytic domain signature 986 999 IPR001245 GO:0004672|GO:0006468
Vium3914g00004 1182 PRINTS Tyrosine kinase catalytic domain signature 1091 1113 IPR001245 GO:0004672|GO:0006468
Vium3914g00004 1182 SUPERFAMILY PYP-like sensor domain (PAS domain) 556 646 IPR035965 -
Vium3914g00004 1182 ProSitePatterns Protein kinases ATP-binding region signature. 918 939 IPR017441 GO:0005524
Vium3914g00004 1182 Gene3D Phosphorylase Kinase; domain 1 905 989 - -
Vium3914g00004 1182 Coils Coil 12 39 - -
Vium3914g00004 1182 SMART serkin_6 912 1166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3914g00004 1182 Gene3D Transferase(Phosphotransferase) domain 1 991 1172 - -
Vium3914g00004 1182 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1031 1043 IPR008271 GO:0004672|GO:0006468
Vium3914g00004 1182 Gene3D PAS domain 556 651 - -
Vium3914g00004 1182 Pfam Protein tyrosine and serine/threonine kinase 912 1162 IPR001245 GO:0004672|GO:0006468
Vium3914g00004 1182 CDD PAS 92 180 IPR000014 -
Vium3914g00004 1182 SUPERFAMILY PYP-like sensor domain (PAS domain) 91 180 IPR035965 -
Vium3914g00004 1182 CDD STKc_MAP3K-like 918 1163 - -
Vium3914g00004 1182 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 746 1165 - -
Vium3914g00004 1182 Pfam PAS domain 561 646 IPR000014 -
Vium3914g00004 1182 Pfam PAS domain 89 180 IPR000014 -
Vium3914g00004 1182 SUPERFAMILY Protein kinase-like (PK-like) 899 1171 IPR011009 -
Vium3914g00004 1182 ProSiteProfiles Protein kinase domain profile. 912 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3914g00004 1182 MobiDBLite consensus disorder prediction 328 346 - -
Vium3914g00004 1182 FunFam PAS domain-containing protein tyrosine kinase family protein 990 1178 - -
Vium3914g00004 1182 MobiDBLite consensus disorder prediction 786 816 - -
Vium3914g00004 1182 MobiDBLite consensus disorder prediction 864 898 - -
Vium3914g00004 1182 CDD PAS 563 646 IPR000014 -
Vium3914g00004 1182 SMART pas_2 70 138 IPR000014 -
Vium3914g00004 1182 SMART pas_2 533 604 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3914g00004 Vium-Chr3914 27534 38880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3914g00004 8 490 MAP Kinase Kinase Kinase AT4G23050 29.755 2.56e-49 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium3914g00004 PK_Tyr_Ser-Thr 1.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3914g00004 - - vum:124836158 2317.35