Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3914g00003 ATGGCTGCTTCAACAATGGCTCTCTCTTCACCGTCATTGGCTGGCCAAGCAATCAAGCTCTCCCCCTCCACCCCTGACCTTTCCGGTGGAAGGATTTCCATGAGGAAAACAGCCTCTAAGTCTGTTTCCTCTGGAAGCCCATGGTACGGCCCAGACCGTGTCAAGTATTTGGGCCCATTCTCCGGTGAGGCCCCATCTTACCTCACTGGTGAATTCCCAGGTGACTATGGTTGGGACACTGCTGGGCTTTCTGCTGACCCGGAGACCTTTGCTAAAAACCGTGAACTTGAAGTCATCCACTCCAGATGGGCCATGTTGGGAGCCTTGGGCTGTGTTTTCCCCGAACTCTTGTCCCGTAACGGTGTGAAGTTCGGCGAGGCCGTGTGGTTTAAGGCTGGGTCTCAGATATTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCGAGCCTGATTCATGCACAGAGCATCCTTGCTATTTGGGCCTCTCAGGTTATTTTGATGGGTGCCGTTGAGGGTTACCGTATTGCCGGTGGGCCTCTTGGTGAGGTGACCGACCCAATTTACCCAGGTGGAAGCTTCGACCCATTGGGCCTTGCTGATGACCCAGATGCTTTTGCTGAGTTGAAGGTGAAAGAGCTGAAGAACGGTAGATTAGCCATGTTCTCCATGTTCGGTTTCTTTGTTCAGGCGATTGTGACCGGAAAGGGACCCCTGGAAAACCTTGCAGACCACCTTGCAGACCCAGTCAACAACAATGCTTGGGCATATGCCACAAACTTTGTCCCCGGAAAGTGA 795 0.5308 MAASTMALSSPSLAGQAIKLSPSTPDLSGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3914g00003 264 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
Vium3914g00003 264 FunFam Chlorophyll a-b binding protein, chloroplastic 55 257 - -
Vium3914g00003 264 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
Vium3914g00003 264 MobiDBLite consensus disorder prediction 19 45 - -
Vium3914g00003 264 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
Vium3914g00003 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 264 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3914g00003 Vium-Chr3914 15185 16099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3914g00003 1 264 Chloroplast and Mitochondria Gene Families AT2G34430 86.842 1.70e-170 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3914g00003 K08912 - ccaj:109815895 525.013