Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3914g00001 ATGATATTTGATTTGACCGCAAAAAAACTCATCAGTTATGATTCAACCAAATCCTCGGAGAACTTAAGGGACAACTTTGTTGCATTTATACAAGGACTCATCTCCTTCCCTCTGGACGTTCCAGGAACAGCTTATCACAAATGTCTGCAGGGTAGGAAAAGGGCAATGAAGATGCTGAAGAAGATGCTGCAGGAAAGACGGGAAATGCAAAAGAAAGAGCAAGAAGATTTCTTTGACTATGTGATTGAAGAACTTAAGAAAGAGGGAACAGTCCTGACTGAAGCGATCGCTCTGGACCTCATGTTTGTGCTCCTATTTGCAAGCTTTGAAACCACTTCTCTCGCTCTCACTTACGCCACCAAAGTACTCTCGGACCATCCCTTAGTACTCAAGCAATTACAAGAGGAACATGAAGCCATCCTGAAGCGACGTGAAGATCCTAACTCCGGAATCACGTGGAAAGAATACAAATCAATGACATATACATTTCAGTTCATAAATGAAACCGTGAGACTCGCAAATATAGTTCCTGGAATCTTCCGGAAGGCACTGAGGGAAATTAACTTTAAGGGATATACCATACCAAAAGGTTGGGCAGTAATGGTGTGTCCGCCTGCTGTGCACTTGAATCCGGCCAAATATCAGGATCCTCTTTCCTTCAACCCACGGAGATGGGAGGGAATTGAACTAAATGGTGCCACAAAACATTTCATGGCTTTCGGTGGAGGCATGAGATTTTGCGTTGGAACAGACTTCACTAAAGTTCAGATGGCTATATTTCTTCATTGTTTGGTAACGAAATACCGGTGGCGACCCGTGAAAGGAGGAAATATCGTTCGAACTCCTGGTTTACAATTTCCAAATGGCTTTCACGTCCAGATCATGGAGAAAGATCAAACGAAACAGGAACCAGAGTTTGACGAAACAAAGTAG 933 0.4309 MIFDLTAKKLISYDSTKSSENLRDNFVAFIQGLISFPLDVPGTAYHKCLQGRKRAMKMLKKMLQERREMQKKEQEDFFDYVIEELKKEGTVLTEAIALDLMFVLLFASFETTSLALTYATKVLSDHPLVLKQLQEEHEAILKRREDPNSGITWKEYKSMTYTFQFINETVRLANIVPGIFRKALREINFKGYTIPKGWAVMVCPPAVHLNPAKYQDPLSFNPRRWEGIELNGATKHFMAFGGGMRFCVGTDFTKVQMAIFLHCLVTKYRWRPVKGGNIVRTPGLQFPNGFHVQIMEKDQTKQEPEFDETK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3914g00001 310 PRINTS P450 superfamily signature 107 124 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3914g00001 310 PRINTS P450 superfamily signature 164 175 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3914g00001 310 PRINTS P450 superfamily signature 247 258 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3914g00001 310 PRINTS P450 superfamily signature 238 247 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3914g00001 310 Coils Coil 52 75 - -
Vium3914g00001 310 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 240 249 IPR017972 GO:0005506|GO:0016705
Vium3914g00001 310 Pfam Cytochrome P450 29 280 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3914g00001 310 PANTHER CYTOCHROME P450 26 1 272 - -
Vium3914g00001 310 SUPERFAMILY Cytochrome P450 21 295 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3914g00001 310 Gene3D Cytochrome P450 1 296 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3914g00001 310 PRINTS E-class P450 group I signature 163 181 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3914g00001 310 PRINTS E-class P450 group I signature 247 270 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3914g00001 310 PRINTS E-class P450 group I signature 203 227 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3914g00001 310 PRINTS E-class P450 group I signature 96 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3914g00001 310 PRINTS E-class P450 group I signature 237 247 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3914g00001 310 PRINTS E-class P450 group I signature 116 142 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3914g00001 Vium-Chr3914 7 2503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3914g00001 1 297 Cytochrome P450 AT1G12740 77.228 5.63e-175 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3914g00001 - - vum:124836156 618.616