Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3907g00005 ATGAAGAAGAAGAAGAAATCAGATACAGAAAGGCAGCATGACGACTACAATGAATTTAAGAGCAATGAAGATAAAGATGATAGTCAATACAAAATGAAGGAGTGGAAGAAGAAAACACTGAGTGAAGTAGGAAAAAGTAAGGAGTATAATGAATTTGAAAGAAATGAAGGTGAAGATGATGCCCATAGTAAGAAGAGGAAGAAGAAAAAATGGAGTAGAGAAAGCAAAAGTAAGGAGTATGAAGTCTTTGAAAAGAATGAAGGTGAAGGTGAAGCTGATGCCAAAGGTAAGGAGAGGAAGAAGAAAAAACTGAGGGAAGAAGTCAAATGTAAGGAGTATGATGAGTTTGAAAACAATGAACGTGAAGATGATGCCCAAGGTAGGAAGAGAAAGAAGAAAAAATGGAGTAAAGAAAGCAAAAGTAAGGAGTGTAATGTCTTTGAAAGGAATGAAGGTGAAGATGATGTGAAAGATAAGAAGAACAACAAACTGAGTGAAGAAGCAAAAAGTAAGGAGTATAATGAATTTGACAGCAATGAAGTTGAACACAATGCCCAAGGTAAGAAGAAAAAAATGAGTAAAGAAAGCAAAAGTGAAGAGTATAAGGTCTTTGAAAGGAATGGAGGTGAAAGCTATTCCGAAGGTAAGAAGAGGAAGAAGAAAAAATTGAGTACAGAAAGAAAAAGTAAGGAGTATGAAATCTTTGAAAAGAATGAAGGTGAGGGTGAAGGTGATGCAAAAGGTAAGGAGAGGAAGAAGAAACAACTAAGGGAGGAAGGCAAAAGTAAGGAATTTGAAAACAATAATGGTGAAGATGATGCCCAAGGTAGGAAGGGGGAGAAGAAAAAGTTGAGTAAAGAAAGCAAAAGTGAGGAGTATAATGTCTTTGAAACGAATGAAGGTGAAGATGATGCCAAAGGTAAGAAGAAGAGAAAAAAACATGGTGAAGAAAGCAAAAGCAAGGAGTATAATGAGTTTGAAAATAACGAAGGTGAAGGTGATGCCCAAGGTAAGAAGAGGAAGAAGAAAAAATTGAGTAAAGAAAACAAAAGTAAGGAGTATAATATATTTCAAAGGAATGAAGGTGAAGACAATGTTGAAGGTAGGAAAAGTAAGAAGGAAAAAATGATTGAAGACAGCAAAAGCAAGGACAAAAATATAATGACAAAGAAGAAAGCCAAGGAAGATAATGGTGACTCTTCTAATCCTGAACACAGTGTATTATCCAAACCCAAACGGGTAACTTTTTCTGATCAAGTGGATGTTTGTTGTGATGGCTTAGTCCGTGGGAAACGGTTCACACCAGAAGAAGATGAGCAGATTAAATCGGCTGTTTATAATTTTATAGAGTCTCGTGGTTTGGGAGAGGAAGGTCTAGATATGGTTCTCCATTGCCAGGCTCATCGGGAAATTAGACATTGTTGGAAGGAAATTGCAGCAGCCTTACCCCACAGGCCAGTGTATAGTGTGTATACTCGTGCCCATATTTTGTTTGAAAGGGGTGAGAAGCGAAGGTGGACACCTGAAGAGTATGAATTTTTACGGAAGGTCAAGGAACAACATGGATCTAATTGGAGACAAGTAGCTGACGCATTGGGAAAAAATCGAATTCATGTAAAGGATGCATGGCGTAGAGTGAAATTAAGAAATACAAATAAAGGACGATGGACCCAAGAGGAGTATCAAAAGTTATTTGATTTAGTGAACCTGGACCTACGTGTGAGGGCTTCACAGGGTTATAGAAAATCAAAACATGGTATGTTGCGAGATAATATTGGTTGGGAGGCAATTGGTGAAAAGTTGGCCACTAGAAACTCCGTGAGCTGCTGCCACAAGTGGTATGATAAATTAAGATCACCCATGGTTGCTACTGGTGCCTGGAGTGATACTGATGACTATCGCCTGGTCGATGCTTTATATAATTTGGATGCGTGCTGCATGGAGGAGGTGGATTGGGACAATCTGCTTGAGCATAGGACTGGTGAGGCATGTAGAAAACGGTGGAACCAAATTGTCCGATATATTGGGGAGCATGGGGGGAAGCCATTTGCTGAGCAGGTTGAAATTCTTGCAAAAAGATATTGCCCCAACTTATTGCAAGAAAGAGAGGCCTTTGATGCAAAACCTTTGGTTTGTTGA 2139 0.3876 MKKKKKSDTERQHDDYNEFKSNEDKDDSQYKMKEWKKKTLSEVGKSKEYNEFERNEGEDDAHSKKRKKKKWSRESKSKEYEVFEKNEGEGEADAKGKERKKKKLREEVKCKEYDEFENNEREDDAQGRKRKKKKWSKESKSKECNVFERNEGEDDVKDKKNNKLSEEAKSKEYNEFDSNEVEHNAQGKKKKMSKESKSEEYKVFERNGGESYSEGKKRKKKKLSTERKSKEYEIFEKNEGEGEGDAKGKERKKKQLREEGKSKEFENNNGEDDAQGRKGEKKKLSKESKSEEYNVFETNEGEDDAKGKKKRKKHGEESKSKEYNEFENNEGEGDAQGKKRKKKKLSKENKSKEYNIFQRNEGEDNVEGRKSKKEKMIEDSKSKDKNIMTKKKAKEDNGDSSNPEHSVLSKPKRVTFSDQVDVCCDGLVRGKRFTPEEDEQIKSAVYNFIESRGLGEEGLDMVLHCQAHREIRHCWKEIAAALPHRPVYSVYTRAHILFERGEKRRWTPEEYEFLRKVKEQHGSNWRQVADALGKNRIHVKDAWRRVKLRNTNKGRWTQEEYQKLFDLVNLDLRVRASQGYRKSKHGMLRDNIGWEAIGEKLATRNSVSCCHKWYDKLRSPMVATGAWSDTDDYRLVDALYNLDACCMEEVDWDNLLEHRTGEACRKRWNQIVRYIGEHGGKPFAEQVEILAKRYCPNLLQEREAFDAKPLVC 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3907g00005 712 SMART sant 623 674 IPR001005 -
Vium3907g00005 712 SMART sant 429 500 IPR001005 -
Vium3907g00005 712 SMART sant 552 619 IPR001005 -
Vium3907g00005 712 SMART sant 502 549 IPR001005 -
Vium3907g00005 712 SUPERFAMILY Homeodomain-like 597 675 IPR009057 -
Vium3907g00005 712 Gene3D - 507 545 - -
Vium3907g00005 712 Pfam Myb-like DNA-binding domain 506 564 - -
Vium3907g00005 712 SUPERFAMILY Homeodomain-like 503 564 IPR009057 -
Vium3907g00005 712 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 503 551 IPR017930 -
Vium3907g00005 712 ProSiteProfiles Myb-like domain profile. 619 672 IPR001005 -
Vium3907g00005 712 MobiDBLite consensus disorder prediction 138 219 - -
Vium3907g00005 712 MobiDBLite consensus disorder prediction 348 401 - -
Vium3907g00005 712 Gene3D - 546 622 - -
Vium3907g00005 712 MobiDBLite consensus disorder prediction 226 339 - -
Vium3907g00005 712 MobiDBLite consensus disorder prediction 74 129 - -
Vium3907g00005 712 ProSiteProfiles Myb-like domain profile. 548 617 IPR001005 -
Vium3907g00005 712 PANTHER GB|AAC33480.1 148 711 - -
Vium3907g00005 712 MobiDBLite consensus disorder prediction 7 65 - -
Vium3907g00005 712 Coils Coil 94 114 - -
Vium3907g00005 712 ProSiteProfiles Myb-like domain profile. 498 547 IPR001005 -
Vium3907g00005 712 MobiDBLite consensus disorder prediction 1 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3907g00005 Vium-Chr3907 49072 52384 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3907g00005 501 690 MYB Transcription Factor Family AT5G02320 25.616 2.82e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium3907g00005 Myb_DNA-bind_6 4.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3907g00005 - - var:108338141 1274.61