Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3907g00004 ATGAAGAAGAAGAAGAAATCAGATACAGAAAGGCAGCATGACGACTACAATGAATTTAAGAGCAATGAAGATAAAGATGATAGTCAATACAAAATGAAGGAGTGGAAGAAGAAAACACTGAGTGAAGTAGGAAAAAGTAAGGAGTATAATGAATTTGAAAGAAATGAAGGTGAAGATGATGCCCATAGTAAGAAGAGGAAGAAGAAAAAATGGAGTAGAGAAAGCAAAAGTAAGGAGTATGAAGTCTTTGAAAAGAATGAAGGTGAAGGTGAAGCTGATGCCAAAGGTAAGGAGAGGAAGAAGAAAAAACTGAGGGAAGAAGTCAAATGTAAGGAGTATGATGAGTTTGAAAACAATGAACGTGAAGATGATGCCCAAGGTAGGAAGAGAAAGAAGAAAAAATGGAGTAAAGAAAGCAAAAGTAAGGAGTGTAATGAATTTGAAAACAATAATGGTGAAGATGATGCCCAAGGTAGGAAGGGGGAGAAGAAAAAGTTGAGTAAAGAAAGCAAAAGTGAGGAGTATAATGTCTTTGAAACGAATGAAGGTGAAGATGATGCCAAAGGTAAGAAGAAGAGAAAAAAACATGGTGAAGAAAGCAAAAGCAAGGAGTATAATGAGTTTGAAAATAACGAAGGTGAAGGTGATGCCCAAGGTAAGAAGAGGAAGAAGAAAAAATTGAGTAAAGAAAACAAAAGTAAGGAGTATAATATATTTCAAAGGAATGAAGGTGAAGACAATGTTGAAGGTAGGAAAAGTAAGAAGGAAAAAATGATTGAAGACAGCAAAAGCAAGGACAAAAATATAATGACAAAGAAGAAAGCCAAGGAAGATAATGGTGACTCTTCTAATCCTGAACACAGTGTATTATCCAAACCCAAACGGGTAACTTTTTCTGATCAAGTGGATGTTTGTTGTGATGGCTTAGTCCGTGGGAAACGGTTCACACCAGAAGAAGATGAGCAGATTAAATCGGCTGTTTATAATTTTATAGAGTCTCGTGGTTTGGGAGAGGAAGGTCTAGATATGGTTCTCCATTGCCAGGCTCATCGGGAAATTAGACATTGTTGGAAGGAAATTGCAGCAGCCTTACCCCACAGGCCAGTGTATAGTGTGTATACTCGTGCCCATATTTTGTTTGAAAGGGGTGAGAAGCGAAGGTGGACACCTGAAGAGTATGAATTTTTACGGAAGGTCAAGGAACAACATGGATCTAATTGGAGACAAGTAGCTGACGCATTGGGAAAAAATCGAATTCATGTAAAGGATGCATGGCGTAGAGTGAAATTAAGAAATACAAATAAAGGACGATGGACCCAAGAGGAGTATCAAAAGTTATTTGATTTAGTGAACCTGGACCTACGTGTGAGGGCTTCACAGGGTTATAGAAAATCAAAACATGGTATGTTGCGAGATAATATTGGTTGGGAGGCAATTGGTGAAAAGTTGGCCACTAGAAACTCCGTGAGCTGCTGCCACAAGTGGTATGATAAATTAAGATCACCCATGGTTGCTACTGGTGCCTGGAGTGATACTGATGACTATCGCCTGGTCGATGCTTTATATAATTTGGATGCGTGCTGCATGGAGGAGGTGGATTGGGACAATCTGCTTGAGCATAGGACTGGTGAGGCATGTAGAAAACGGTGGAACCAAATTGTCCGATATATTGGGGAGCATGGGGGGAAGCCATTTGCTGAGCAGGTTGAAATTCTTGCAAAAAGATATTGCCCCAACTTATTGCAAGAAAGAGAGGCCTTTGATGCAAAACCTTTGGTTTGTTGA 1785 0.3933 MKKKKKSDTERQHDDYNEFKSNEDKDDSQYKMKEWKKKTLSEVGKSKEYNEFERNEGEDDAHSKKRKKKKWSRESKSKEYEVFEKNEGEGEADAKGKERKKKKLREEVKCKEYDEFENNEREDDAQGRKRKKKKWSKESKSKECNEFENNNGEDDAQGRKGEKKKLSKESKSEEYNVFETNEGEDDAKGKKKRKKHGEESKSKEYNEFENNEGEGDAQGKKRKKKKLSKENKSKEYNIFQRNEGEDNVEGRKSKKEKMIEDSKSKDKNIMTKKKAKEDNGDSSNPEHSVLSKPKRVTFSDQVDVCCDGLVRGKRFTPEEDEQIKSAVYNFIESRGLGEEGLDMVLHCQAHREIRHCWKEIAAALPHRPVYSVYTRAHILFERGEKRRWTPEEYEFLRKVKEQHGSNWRQVADALGKNRIHVKDAWRRVKLRNTNKGRWTQEEYQKLFDLVNLDLRVRASQGYRKSKHGMLRDNIGWEAIGEKLATRNSVSCCHKWYDKLRSPMVATGAWSDTDDYRLVDALYNLDACCMEEVDWDNLLEHRTGEACRKRWNQIVRYIGEHGGKPFAEQVEILAKRYCPNLLQEREAFDAKPLVC 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3907g00004 594 MobiDBLite consensus disorder prediction 138 221 - -
Vium3907g00004 594 CDD SANT 437 496 IPR001005 -
Vium3907g00004 594 ProSiteProfiles Myb-like domain profile. 501 554 IPR001005 -
Vium3907g00004 594 MobiDBLite consensus disorder prediction 230 283 - -
Vium3907g00004 594 Gene3D - 389 428 - -
Vium3907g00004 594 ProSiteProfiles Myb-like domain profile. 380 429 IPR001005 -
Vium3907g00004 594 ProSiteProfiles Myb-like domain profile. 430 499 IPR001005 -
Vium3907g00004 594 SUPERFAMILY Homeodomain-like 479 557 IPR009057 -
Vium3907g00004 594 SUPERFAMILY Homeodomain-like 385 446 IPR009057 -
Vium3907g00004 594 SMART sant 434 501 IPR001005 -
Vium3907g00004 594 SMART sant 384 431 IPR001005 -
Vium3907g00004 594 SMART sant 505 556 IPR001005 -
Vium3907g00004 594 SMART sant 311 382 IPR001005 -
Vium3907g00004 594 MobiDBLite consensus disorder prediction 74 129 - -
Vium3907g00004 594 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 385 433 IPR017930 -
Vium3907g00004 594 MobiDBLite consensus disorder prediction 1 294 - -
Vium3907g00004 594 MobiDBLite consensus disorder prediction 7 65 - -
Vium3907g00004 594 PANTHER GB|AAC33480.1 3 593 - -
Vium3907g00004 594 Coils Coil 94 114 - -
Vium3907g00004 594 Pfam Myb-like DNA-binding domain 388 446 - -
Vium3907g00004 594 Gene3D - 429 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3907g00004 Vium-Chr3907 49072 52384 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3907g00004 383 572 MYB Transcription Factor Family AT5G02320 25.616 1.92e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium3907g00004 Myb_DNA-bind_6 3.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3907g00004 - - var:108338141 937.947