Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3907g00003 ATGAAGAAGAAGAAGAAATCAGATACAGAAAGGCAGCATGACGACTACAATGAATTTAAGAGCAATGAAGATAAAGATGATAGTCAATACAAAATGAAGGAGTGGAAGAAGAAAACACTGAGTGAAGTAGGAAAAAGTAAGGAGTATAATGAATTTGAAAGAAATGAAGGTGAAGATGATGCCCATAGTAAGAAGAGGAAGAAGAAAAAATGGAGTAGAGAAAGCAAAAGTAAGGAGTATGAAGTCTTTGAAAAGAATGAAGGTGAAGGTGAAGCTGATGCCAAAGGTAAGGAGAGGAAGAAGAAAAAACTGAGGGAAGAAGGCAAAAGTAAGGAGTGTAATGTCTTTGAAAGGAATGAAGGTGAAGATGATGTGAAAGATAAGAAGAACAACAAACTGAGTGAAGAAGCAAAAAGTAAGGAGTATAATGAATTTGACAGCAATGAAGTTGAACACAATGCCCAAGGTAAGAAGAAAAAAATGAGTAAAGAAAGCAAAAGTGAAGAGTATAAGGTCTTTGAAAGGAATGGAGGTGAAAGCTATTCCGAAGGTAAGAAGAGGAAGAAGAAAAAATTGAGTACAGAAAGAAAAAGTAAGGAGTATGAAATCTTTGAAAAGAATGAAGGTGAGGGTGAAGGTGATGCAAAAGGTAAGGAGAGGAAGAAGAAACAACTAAGGGAGGAAGGCAAAAGTAAGGAATTTGAAAACAATAATGGTGAAGATGATGCCCAAGGTAGGAAGGGGGAGAAGAAAAAGTTGAGTAAAGAAAGCAAAAGTGAGGAGTATAATGTCTTTGAAACGAATGAAGGTGAAGATGATGCCAAAGGTAAGAAGAAGAGAAAAAAACATGGTGAAGAAAGCAAAAGCAAGGAGTATAATGAGTTTGAAAATAACGAAGGTGAAGGTGATGCCCAAGGTAAGAAGAGGAAGAAGAAAAAATTGAGTAAAGAAAACAAAAGTAAGGAGTATAATATATTTCAAAGGAATGAAGGTGAAGACAATGTTGAAGGTAGGAAAAGTAAGAAGGAAAAAATGATTGAAGACAGCAAAAGCAAGGACAAAAATATAATGACAAAGAAGAAAGCCAAGGAAGATAATGGTGACTCTTCTAATCCTGAACACAGTGTATTATCCAAACCCAAACGGGTAACTTTTTCTGATCAAGTGGATGTTTGTTGTGATGGCTTAGTCCGTGGGAAACGGTTCACACCAGAAGAAGATGAGCAGATTAAATCGGCTGTTTATAATTTTATAGAGTCTCGTGGTTTGGGAGAGGAAGGTCTAGATATGGTTCTCCATTGCCAGGCTCATCGGGAAATTAGACATTGTTGGAAGGAAATTGCAGCAGCCTTACCCCACAGGCCAGTGTATAGTGTGTATACTCGTGCCCATATTTTGTTTGAAAGGGGTGAGAAGCGAAGGTGGACACCTGAAGAGTATGAATTTTTACGGAAGGTCAAGGAACAACATGGATCTAATTGGAGACAAGTAGCTGACGCATTGGGAAAAAATCGAATTCATGTAAAGGATGCATGGCGTAGAGTGAAATTAAGAAATACAAATAAAGGACGATGGACCCAAGAGGAGTATCAAAAGTTATTTGATTTAGTGAACCTGGACCTACGTGTGAGGGCTTCACAGGGTTATAGAAAATCAAAACATGGTATGTTGCGAGATAATATTGGTTGGGAGGCAATTGGTGAAAAGTTGGCCACTAGAAACTCCGTGAGCTGCTGCCACAAGTGGTATGATAAATTAAGATCACCCATGGTTGCTACTGGTGCCTGGAGTGATACTGATGACTATCGCCTGGTCGATGCTTTATATAATTTGGATGCGTGCTGCATGGAGGAGGTGGATTGGGACAATCTGCTTGAGCATAGGACTGGTGAGGCATGTAGAAAACGGTGGAACCAAATTGTCCGATATATTGGGGAGCATGGGGGGAAGCCATTTGCTGAGCAGGTTGAAATTCTTGCAAAAAGATATTGCCCCAACTTATTGCAAGAAAGAGAGGCCTTTGATGCAAAACCTTTGGTTTGTTGA 2046 0.3895 MKKKKKSDTERQHDDYNEFKSNEDKDDSQYKMKEWKKKTLSEVGKSKEYNEFERNEGEDDAHSKKRKKKKWSRESKSKEYEVFEKNEGEGEADAKGKERKKKKLREEGKSKECNVFERNEGEDDVKDKKNNKLSEEAKSKEYNEFDSNEVEHNAQGKKKKMSKESKSEEYKVFERNGGESYSEGKKRKKKKLSTERKSKEYEIFEKNEGEGEGDAKGKERKKKQLREEGKSKEFENNNGEDDAQGRKGEKKKLSKESKSEEYNVFETNEGEDDAKGKKKRKKHGEESKSKEYNEFENNEGEGDAQGKKRKKKKLSKENKSKEYNIFQRNEGEDNVEGRKSKKEKMIEDSKSKDKNIMTKKKAKEDNGDSSNPEHSVLSKPKRVTFSDQVDVCCDGLVRGKRFTPEEDEQIKSAVYNFIESRGLGEEGLDMVLHCQAHREIRHCWKEIAAALPHRPVYSVYTRAHILFERGEKRRWTPEEYEFLRKVKEQHGSNWRQVADALGKNRIHVKDAWRRVKLRNTNKGRWTQEEYQKLFDLVNLDLRVRASQGYRKSKHGMLRDNIGWEAIGEKLATRNSVSCCHKWYDKLRSPMVATGAWSDTDDYRLVDALYNLDACCMEEVDWDNLLEHRTGEACRKRWNQIVRYIGEHGGKPFAEQVEILAKRYCPNLLQEREAFDAKPLVC 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3907g00003 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 472 520 IPR017930 -
Vium3907g00003 681 SUPERFAMILY Homeodomain-like 566 644 IPR009057 -
Vium3907g00003 681 MobiDBLite consensus disorder prediction 195 308 - -
Vium3907g00003 681 SMART sant 398 469 IPR001005 -
Vium3907g00003 681 SMART sant 521 588 IPR001005 -
Vium3907g00003 681 SMART sant 471 518 IPR001005 -
Vium3907g00003 681 SMART sant 592 643 IPR001005 -
Vium3907g00003 681 Gene3D - 476 514 - -
Vium3907g00003 681 ProSiteProfiles Myb-like domain profile. 517 586 IPR001005 -
Vium3907g00003 681 MobiDBLite consensus disorder prediction 1 381 - -
Vium3907g00003 681 PANTHER GB|AAC33480.1 121 680 - -
Vium3907g00003 681 Gene3D - 515 591 - -
Vium3907g00003 681 ProSiteProfiles Myb-like domain profile. 467 516 IPR001005 -
Vium3907g00003 681 MobiDBLite consensus disorder prediction 74 188 - -
Vium3907g00003 681 SUPERFAMILY Homeodomain-like 472 533 IPR009057 -
Vium3907g00003 681 MobiDBLite consensus disorder prediction 7 65 - -
Vium3907g00003 681 MobiDBLite consensus disorder prediction 317 370 - -
Vium3907g00003 681 Pfam Myb-like DNA-binding domain 475 533 - -
Vium3907g00003 681 ProSiteProfiles Myb-like domain profile. 588 641 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3907g00003 Vium-Chr3907 49072 52385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3907g00003 470 659 MYB Transcription Factor Family AT5G02320 25.616 2.35e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium3907g00003 Myb_DNA-bind_6 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3907g00003 - - var:108338141 1118.61