Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3907g00002 ATGATTTTGATGTCAACCTCCTTCGTGTTCATCCATGTTTTCCTTCATTTTTTGCTTCTCTCTTTCCAAGTGAACTCAGTTTCTATGAATGTCCCATTTGCTTCATCTGAACGAGCTAAGACATTGTTACTTAAACCTTCTAGGCAATCTCTGTCTCAAGGTCCTATTGTGACTCCAAGACCAAAACTTCCTCATTATGACCATCATCACCACAGTGGTAAATCTTATCCTGTGGTTCCATCCCCTTATAAAGACCCAGCTTGTAGCCAAATCTGTACTGATCCATTCACTGCAACTCCTTTTGGTTCACCTTGTGGCTGTATATTTCCCATGAAAGTCAGACTAGTACTGGGTGTAGCTCCTCTGGTTGTTTTTCCAGTCATTACTGAGTTAGAGATTGAAATTGCATCTGGAACATATTTGAAGCAGAGCCAAGTGAGGATAATAGGTGTCAGTGCTGACAATCAAAATCAGTGGAGAACCATTGTCGATATTGACTTGGTTCCACTTGGAGAAAAATTTGACAATACCACTGCACTTCTGTTATATGAGAGGTTTTGGAACAAAAAAGTTCATCTAAATAGGAGCCTTTTTGGTGATTATTCCACATTGTACGTTGCTTATCCAGGTATTCCATCATCACTGCCACCTGGATATCAAATTGGGAGTAGTCCCCTGCCCAGTAATACCGTTGGTTTTCTCCCAATCACTGCTTCCTTCATGAATGAGCACGAGAAATTGACTCTTAAAACCATACTCATTATTTCTCTATGTTCTGCTGTACCCTTTTTAGTTTTGGTTGGAGCATTTTTCATTTTGTTGAAATGGTGGAAAATTAGGAGCTCATCAAGTGCTATGGGCCCTTCACTCACGTCATATCTAAATAAGAGATATGGCTTGGAATCTATGTTGTCAGGCAGAATTATGAGCTCAAGATCTATGTCCCTTGTGTCCGCTATTACTGCTTCTATTCTCTCCGTTAAAACATTTTCCTTTTCCGAGCTTGAGAAAGCAACAGATAAATTCAATTCTCAGAGAGTATTAGGAGAAGGAGGATTTGGACGTGTTTATTCTGGGACATTGGATGATGGAAATGAAGTTGCAGTTAAGCTGCTAACAAAGAATGGTCAGAATAGAGACCGTGAATTTATTGCAGAAGTTGAGATGCTAAGCCGTTTGCATCATCGTAATCTTGTGAAACTCTTCGGTATATGCATAGAAGGGAGAAGGCGTTGCTTGGTTTATGAGCTGGTTTACAATGGCAGTGTTGAGTCTCATTTGCATGGTGATGACAAGAAAAACTGCCCTCTGGATTGGGAAGCACGGAAAAGAATTGCCATTGGATCTGCAAGAGGTTTGGCCTATCTACACGAGGATTCCAATCCTCGTGTAATTCACCGAGACTTTAAAGCTAGTAACGTGTTGTTAGAAGATGACTTTACCCCTAAGGTTTCTGATTTTGGATTAGCCAGAGAAGCGGGTGAAGGAAATGGTCATATTTCTACAAGGGTCATGGGTACTTTTGGGTATGTTGCCCCAGAATATGCAATGACAGGCCATTTACTCGTTAAAAGTGATGTTTATAGTTATGGTGTTGTGCTGCTTGAACTTATAACAGGCAGAAAACCAGTGGACATGTCTCAACCTCAAGGAGAGGAGAATCTTGTAACGTGGGCTCGACCTCTGTTGAGATACAGGGAAGGTTTAGAAAAGGTGGTGGATCCATTTTTGGCTGGAAAGTATGACTTCGATGAGATGGCAAAGATGGCGGCTATTGCTTCCTTGTGCGTCCACCCGGAGGTCACTCAAAGGCCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATCTACAACGACACCAATGAGAGTGAGAAGGAGTCTTTGTGCCATGAATCGGATTTTGGAGGTGACCTTGTCTTTTCTGATAGCAGTTGGTTGGATGGTGAAGGGGTAACCCCGACATTAACTTATGGACCTGAATCTTCCCTCATCACTATGGATTACAGTTCTGGTCTACTAGAAATGGAAAAGGGAACATCAAGCTTGAATGCAGATGAGACATCTTTGCCAATCAGGCACGGGAATAGATCAGGCCCCTTGAGAACAGCCCGGGGTAAGCCATCCTTTACTAAGCTTACTCGAAGTCGCAGCGATCATGTCGTATCCTTCCAAGCTTGTTTGTAA 2187 0.4216 MILMSTSFVFIHVFLHFLLLSFQVNSVSMNVPFASSERAKTLLLKPSRQSLSQGPIVTPRPKLPHYDHHHHSGKSYPVVPSPYKDPACSQICTDPFTATPFGSPCGCIFPMKVRLVLGVAPLVVFPVITELEIEIASGTYLKQSQVRIIGVSADNQNQWRTIVDIDLVPLGEKFDNTTALLLYERFWNKKVHLNRSLFGDYSTLYVAYPGIPSSLPPGYQIGSSPLPSNTVGFLPITASFMNEHEKLTLKTILIISLCSAVPFLVLVGAFFILLKWWKIRSSSSAMGPSLTSYLNKRYGLESMLSGRIMSSRSMSLVSAITASILSVKTFSFSELEKATDKFNSQRVLGEGGFGRVYSGTLDDGNEVAVKLLTKNGQNRDREFIAEVEMLSRLHHRNLVKLFGICIEGRRRCLVYELVYNGSVESHLHGDDKKNCPLDWEARKRIAIGSARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREAGEGNGHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELITGRKPVDMSQPQGEENLVTWARPLLRYREGLEKVVDPFLAGKYDFDEMAKMAAIASLCVHPEVTQRPFMGEVVQALKLIYNDTNESEKESLCHESDFGGDLVFSDSSWLDGEGVTPTLTYGPESSLITMDYSSGLLEMEKGTSSLNADETSLPIRHGNRSGPLRTARGKPSFTKLTRSRSDHVVSFQACL 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3907g00002 728 FunFam Receptor-like serine/threonine-protein kinase ALE2 418 632 - -
Vium3907g00002 728 FunFam receptor-like serine/threonine-protein kinase ALE2 315 417 - -
Vium3907g00002 728 Gene3D Phosphorylase Kinase; domain 1 315 417 - -
Vium3907g00002 728 ProSiteProfiles Protein kinase domain profile. 342 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3907g00002 728 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Vium3907g00002 728 Pfam Protein tyrosine and serine/threonine kinase 344 613 IPR001245 GO:0004672|GO:0006468
Vium3907g00002 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Vium3907g00002 728 PANTHER OS01G0750732 PROTEIN 87 628 - -
Vium3907g00002 728 MobiDBLite consensus disorder prediction 685 706 - -
Vium3907g00002 728 Gene3D Transferase(Phosphotransferase) domain 1 418 636 - -
Vium3907g00002 728 SUPERFAMILY Protein kinase-like (PK-like) 326 617 IPR011009 -
Vium3907g00002 728 CDD STKc_IRAK 348 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3907g00002 Vium-Chr3907 38715 46343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3907g00002 89 715 Receptor kinase-like Gene Family AT5G56890 52.469 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vium3907g00002 PK_Tyr_Ser-Thr 7.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3907g00002 - - gmx:100790546 1038.48