Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00070 ATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCATGAAGAAGATCAAATTCTCATCAATTACATCAACATTTATGGCCATTCTAATTGGCGTGCTCTGCCCAAACTAGCTGGGCTGTTAAGGTGTGGAAAGAGCTGTAGACTTCGGTGGATAAATTATCTGAGACCAGACATCAAACGAGGCAACTTCACCCCAGAAGAAGAGGATGCTATAATCAGTTTGCATCAAATGTTGGGAAACAGATGGTCGGCTATAGCTGCGAGATTACCTGGTAGAACAGACAACGAGATAAAAAACGTGTGGCACACCCACTTGAAGAAGAGGTTGCCACAAAATTACCGACAAAGCCAAGAGCAACAACGAAGCAAAAAACAACCAAAGTTGGATGGGGACGCTTCCAAAATCAATTACCAAGACGTCAAACTAGAACAACAACAAGACCCCGTGAATAACGTTCACGTTCATGCATCAACCAAAGAAGATAATAGCACAGAGGAAATGCCACTTTCTCCTCCCCAATGTTCTAGCGATATGTCTTCGCTCACCAATAGTGACAACAATAGCAGCATTAATAATAGTAATAATAATTGTGACATGTCCTCGCATGTTAATGATATTGACACACCGGAGAACAATCTTGCACTGGACGAGGATTTCTGGTCGGAAGTATTGTTATCTGACGATAGTTCCGGTGAGACAAGTGGATTTCCGAGCATTGATTATGGTCGATTTGAACCAATGTCTAGCGAAGAAGTAGGGGTGCTTATAGATGGTAGTTCGTCAAGTATGAGCGATGGCATGGACTTTTGGTGCAACGTTTACGCCAGAGCTGAGGAATTCAACCAGTTACTTGAATTATGA 882 0.4331 MGRAPCCEKMGLKRGPWTHEEDQILINYINIYGHSNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTPEEEDAIISLHQMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNYRQSQEQQRSKKQPKLDGDASKINYQDVKLEQQQDPVNNVHVHASTKEDNSTEEMPLSPPQCSSDMSSLTNSDNNSSINNSNNNCDMSSHVNDIDTPENNLALDEDFWSEVLLSDDSSGETSGFPSIDYGRFEPMSSEEVGVLIDGSSSSMSDGMDFWCNVYARAEEFNQLLEL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00070 293 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium3906g00070 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium3906g00070 293 CDD SANT 69 112 IPR001005 -
Vium3906g00070 293 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 236 - -
Vium3906g00070 293 CDD SANT 16 61 IPR001005 -
Vium3906g00070 293 SMART sant 66 114 IPR001005 -
Vium3906g00070 293 SMART sant 13 63 IPR001005 -
Vium3906g00070 293 FunFam Transcription factor MYB15 68 140 - -
Vium3906g00070 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium3906g00070 293 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium3906g00070 293 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vium3906g00070 293 Gene3D - 11 67 - -
Vium3906g00070 293 FunFam MYB-related transcription factor 13 66 - -
Vium3906g00070 293 MobiDBLite consensus disorder prediction 112 139 - -
Vium3906g00070 293 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium3906g00070 293 MobiDBLite consensus disorder prediction 163 209 - -
Vium3906g00070 293 Gene3D - 69 141 - -
Vium3906g00070 293 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00070 Vium-Chr3906 458940 461188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00070 1 238 MYB Transcription Factor Family AT1G06180 57.202 1.57e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3906g00070 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00070 K09422 - gmx:100775603 417.157