Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00063 ATGGAAGAAGCAGGTTATGATTGCCCCAAATTTCAGGAGAACGAAAATCTTGCAGTGCCCCCTGGTTTTGTATCCCTCACATCTTTCATTTTGAGAAAGAGTGGAAATGTTAAGAAAAATGATAACTCTACAGCCTTTCCAGTTGCATCTGAACAAGAGCCAAACTGTATGAAGACTGAACTTGAGACGAATGACATTGATGCTTATAGGCAGGGTCTTATACGTCGGCCATGGATAAACATGGACCCGAGCAACAACCACAAGCCTAAGGAATCTCACACAAAGCATCTTCCTATGAACCTACCTATAAATCCTAGTCGTCCAAAGGGGACCATACGGGGATGTCCTAGTTGCAATGATTGTGTGAAGGTAACAGCAAGGTGGCATCCTAAGGATGCAATAAGAGAAGATTTGGAAGAAGCTCCTATCTTCCACCCAACAGAAGAGGAATTCAAAGACACGCTTACATATATTGCAAGTGTACGTTCCAAAGCAGAAACTTATGGAATTTGCCGAATTGTTCCTCCTACTTGCTGGAAACCACCATGCTTTCTTCAGAGAGAACACATATGGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGACACCAAGTTCGGCGAATTGATGGACATCAAGAAATTATGGCCAGTGCTTGTGAAAATACAAAAACCAAGAGAAAAAGAGATGTAGAAGTAGCTTTGGGCTCTCAGCTTTGTAAAAGAAACACTAGCAACCCAAATAACCATAATGTTGAAGAATGTGATTGTGAGTCTGAACCAGGTCCTAAATTCAGTCTCAAAACATTTAAGGAATATGCAGATGTGTTTAAGAACCAGTACTTTAATTACAATGATAAGAAGAAATTCATAGGTTCCAGTATAAAATTAGCTATACCTGAGCAGTCGGAACCATCTGTGGAGAATATTGAGGGTGAATATGGTCGAATTGTTCAAAATCCATCTGAAGAAATTGAGGTGCTTTGTTGTAATAAATTGGAGGCTGGAGTTTTTAGCAGTGGATTTCCTACAGTTTCTGATTCTGTGGGGGCAAACGCTTACCCTGAATATTTGAAATCTGGATGGAACTTGAATAATATTCTTTCTGGTTCCCTTCTTTCGTTTGAAAGCCCTGATGTTTTATGTAACCTAGACCCCAATGTTAGTGTGGGAATGTGCTTCTCTGCTGTCAACTGGAAAGTTGAAGAACACCACTTATACTCATTATCGTACATACATCTGGGTGAACCAAAAGTGTGGTATAGCGTCCCAGGAAGATTTGCTGTTAACTTTGAAACAATTTGGAAAAAGTATCTACCAGATTTGCATGCAGGAAAGCATCATATGCATGATACTATGGAGATGCAATTATCATGCTCCATATTGAAGGCAGAGGGTATACCTGTCTATCGTTGTGTTCAGTATCCTCGTGAATTTGTTCTCGTCTTCCCTGGGGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAATCAGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTCATGGACAGAACGTTGTAGAGCTTTATCGTGAACAGAGGAAGAAGACATTATTTTCATATGACAAGCTTTTATTAGGAGCTGCAAATGAAGCTGTCAGGGCCCAGTGGGAAACTGGTCTATGCATGAAGAGCACATCCTCCGACAGCTTAACATATAAAGGTGCCTATATAAAAAATGAGTTCTTAAGAAAAGCTTTCAACTTTCGCATTCAGAGTGAAATTTTGAAGAGGAAATTTCTTACGAGTTCATTACTATCACAAAGAATGGATGAAAAATTTTATGCCACCTGTAGGAGGGAATGCAGTATTTGCCTGTGTGATTTACACCTATCTGCTGTTGGGTGTTCATGTTCAAATGACAAGTTTGCATGTCTTGATCATGCAAAACATTTTTGTTCTTGCACTTGGAGCAACAAAATTTTCTTCTACCGTTATGAAATCAGTGAGTTAAATGTTCTTCGTCAAGCTTTGGAGGGGAAATTAAGTGCAGTCTTTAAATGGTCCAAAGAGTATCTCGGATTAACTCTGAACTCTGCTGCCTCCAAGAGATCAAAAGCACGCTCAGAAAATGTTAGTGGTTCAACCTTCCCTTCCCAAGACTTGCATACGAAAAAATCTATATCCCAGACAGCAGCAAATGAATCAAAAGAGAAACTACGTCAATTGCAGGAAATATTGAATGCATCAAAGAAAAAACAAAATGAAGAGGTTTCCCAGGTCTCGCAGACTTATGGTGGCACTCACAGTTCATATGACACTCATTCGAAAACGAAGACAGATTTGCCTCAGTCAAGCTGTGCAAGTGGTGCGAAAGGAATCAGTTCTGCTGGCACCAAAATTGATACGGAGATGGTTGGGAGCAAGGTAACAATTTCAAAGAAAGGAGATCCAAAAGCATCGAAAGTCTCTTCAGTTACAAACTTACGGTACTTGTCTTTTCTACAAGAACATGTGTTACTTGATGTTTCATCTGATAGTACGAGTACCTCTTCATCGGACTCTGAAGTTGCATAA 2550 0.3988 MEEAGYDCPKFQENENLAVPPGFVSLTSFILRKSGNVKKNDNSTAFPVASEQEPNCMKTELETNDIDAYRQGLIRRPWINMDPSNNHKPKESHTKHLPMNLPINPSRPKGTIRGCPSCNDCVKVTARWHPKDAIREDLEEAPIFHPTEEEFKDTLTYIASVRSKAETYGICRIVPPTCWKPPCFLQREHIWEKSEFVAQIQRIDGHQVRRIDGHQEIMASACENTKTKRKRDVEVALGSQLCKRNTSNPNNHNVEECDCESEPGPKFSLKTFKEYADVFKNQYFNYNDKKKFIGSSIKLAIPEQSEPSVENIEGEYGRIVQNPSEEIEVLCCNKLEAGVFSSGFPTVSDSVGANAYPEYLKSGWNLNNILSGSLLSFESPDVLCNLDPNVSVGMCFSAVNWKVEEHHLYSLSYIHLGEPKVWYSVPGRFAVNFETIWKKYLPDLHAGKHHMHDTMEMQLSCSILKAEGIPVYRCVQYPREFVLVFPGAYHSGFDCGFNCSESVSFAPLEWLLHGQNVVELYREQRKKTLFSYDKLLLGAANEAVRAQWETGLCMKSTSSDSLTYKGAYIKNEFLRKAFNFRIQSEILKRKFLTSSLLSQRMDEKFYATCRRECSICLCDLHLSAVGCSCSNDKFACLDHAKHFCSCTWSNKIFFYRYEISELNVLRQALEGKLSAVFKWSKEYLGLTLNSAASKRSKARSENVSGSTFPSQDLHTKKSISQTAANESKEKLRQLQEILNASKKKQNEEVSQVSQTYGGTHSSYDTHSKTKTDLPQSSCASGAKGISSAGTKIDTEMVGSKVTISKKGDPKASKVSSVTNLRYLSFLQEHVLLDVSSDSTSTSSSDSEVA 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00063 849 Gene3D Cupin 126 506 - -
Vium3906g00063 849 MobiDBLite consensus disorder prediction 744 784 - -
Vium3906g00063 849 PANTHER LYSINE-SPECIFIC DEMETHYLASE 136 779 - -
Vium3906g00063 849 MobiDBLite consensus disorder prediction 80 108 - -
Vium3906g00063 849 ProSiteProfiles JmjC domain profile. 358 522 IPR003347 -
Vium3906g00063 849 SMART JmjN_1 140 181 IPR003349 -
Vium3906g00063 849 Pfam JmjC domain, hydroxylase 390 505 IPR003347 -
Vium3906g00063 849 MobiDBLite consensus disorder prediction 697 727 - -
Vium3906g00063 849 Pfam C5HC2 zinc finger 613 663 IPR004198 -
Vium3906g00063 849 MobiDBLite consensus disorder prediction 742 785 - -
Vium3906g00063 849 Pfam jmjN domain 142 175 IPR003349 -
Vium3906g00063 849 Coils Coil 724 748 - -
Vium3906g00063 849 SMART cupin_9 358 522 IPR003347 -
Vium3906g00063 849 ProSiteProfiles JmjN domain profile. 141 182 IPR003349 -
Vium3906g00063 849 SUPERFAMILY Clavaminate synthase-like 264 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00063 Vium-Chr3906 383314 390448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00063 8 693 JUMONJI Transcription Factor Family AT1G08620 44.823 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium3906g00063 JmjC 5.3e-31 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00063 K11446 - gmx:100804864 1210.67