Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00062 ATGGAAGAAGCAGGTTATGATTGCCCCAAATTTCAGGAGAACGAAAATCTTGCAGTGCCCCCTGGTTTTGTATCCCTCACATCTTTCATTTTGAGAAAGAGTGGAAATGTTAAGAAAAATGATAACTCTACAGCCTTTCCAGTTGCATCTGAACAAGAGCCAAACTGTATGAAGACTGAACTTGAGACGAATGACATTGATGCTTATAGGCAGGGTCTTATACGTCGGCCATGGATAAACATGGACCCGAGCAACAACCACAAGCCTAAGGAATCTCACACAAAGCATCTTCCTATGAACCTACCTATAAATCCTAGTCGTCCAAAGGGGACCATACGGGGATGTCCTAGTTGCAATGATTGTGTGAAGGTAACAGCAAGGTGGCATCCTAAGGATGCAATAAGAGAAGATTTGGAAGAAGCTCCTATCTTCCACCCAACAGAAGAGGAATTCAAAGACACGCTTACATATATTGCAAGTGTACGTTCCAAAGCAGAAACTTATGGAATTTGCCGAATTGTTCCTCCTACTTGCTGGAAACCACCATGCTTTCTTCAGAGAGAACACATATGGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGACACCAAGTTCGGCGAATTGATGGACATCAAGAAATTATGGCCAGTGCTTGTGAAAATACAAAAACCAAGAGAAAAAGAGATGTAGAAGTAGCTTTGGGCTCTCAGCTTTGTAAAAGAAACACTAGCAACCCAAATAACCATAATGTTGAAGAATGTGATTGTGAGTCTGAACCAGGTCCTAAATTCAGTCTCAAAACATTTAAGGAATATGCAGATGTGTTTAAGAACCAGTACTTTAATTACAATGATAAGAAGAAATTCATAGGTTCCAGTATAAAATTAGCTATACCTGAGCAGTCGGAACCATCTGTGGAGAATATTGAGGGTGAATATGGTCGAATTGTTCAAAATCCATCTGAAGAAATTGAGGTGCTTTGTTGTAATAAATTGGAGGCTGGAGTTTTTAGCAGTGGATTTCCTACAGTTTCTGATTCTGTGGGGGCAAACGCTTACCCTGAATATTTGAAATCTGGATGGAACTTGAATAATATTCTTTCTGGTTCCCTTCTTTCGTTTGAAAGCCCTGATGTTTTATGTAACCTAGACCCCAATGTTAGTGTGGGAATGTGCTTCTCTGCTGTCAACTGGGAGATGCAATTATCATGCTCCATATTGAAGGCAGAGGGTATACCTGTCTATCGTTGTGTTCAGTATCCTCGTGAATTTGTTCTCGTCTTCCCTGGGGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAATCAGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTCATGGACAGAACGTTGTAGAGCTTTATCGTGAACAGAGGAAGAAGACATTATTTTCATATGACAAGCTTTTATTAGGAGCTGCAAATGAAGCTGTCAGGGCCCAGTGGGAAACTGGTCTATGCATGAAGAGCACATCCTCCGACAGCTTAACATATAAAGGTGCCTATATAAAAAATGAGTTCTTAAGAAAAGCTTTCAACTTTCGCATTCAGAGTGAAATTTTGAAGAGGAAATTTCTTACGAGTTCATTACTATCACAAAGAATGGATGAAAAATTTTATGCCACCTGTAGGAGGGAATGCAGTATTTGCCTGTGTGATTTACACCTATCTGCTGTTGGGTGTTCATGTTCAAATGACAAGTTTGCATGTCTTGATCATGCAAAACATTTTTGTTCTTGCACTTGGAGCAACAAAATTTTCTTCTACCGTTATGAAATCAGTGAGTTAAATGTTCTTCGTCAAGCTTTGGAGGGGAAATTAAGTGCAGTCTTTAAATGGTCCAAAGAGTATCTCGGATTAACTCTGAACTCTGCTGCCTCCAAGAGATCAAAAGCACGCTCAGAAAATGTTAGTGGTTCAACCTTCCCTTCCCAAGACTTGCATACGAAAAAATCTATATCCCAGACAGCAGCAAATGAATCAAAAGAGAAACTACGTCAATTGCAGGAAATATTGAATGCATCAAAGAAAAAACAAAATGAAGAGGTTTCCCAGGTCTCGCAGACTTATGGTGGCACTCACAGTTCATATGACACTCATTCGAAAACGAAGACAGATTTGCCTCAGTCAAGCTGTGCAAGTGGTGCGAAAGGAATCAGTTCTGCTGGCACCAAAATTGATACGGAGATGGTTGGGAGCAAGGTAACAATTTCAAAGAAAGGAGATCCAAAAGCATCGAAAGTCTCTTCAGTTACAAACTTACGGTACTTGTCTTTTCTACAAGAACATGTGTTACTTGATGTTTCATCTGATAGTACGAGTACCTCTTCATCGGACTCTGAAGTTGCATAA 2388 0.4008 MEEAGYDCPKFQENENLAVPPGFVSLTSFILRKSGNVKKNDNSTAFPVASEQEPNCMKTELETNDIDAYRQGLIRRPWINMDPSNNHKPKESHTKHLPMNLPINPSRPKGTIRGCPSCNDCVKVTARWHPKDAIREDLEEAPIFHPTEEEFKDTLTYIASVRSKAETYGICRIVPPTCWKPPCFLQREHIWEKSEFVAQIQRIDGHQVRRIDGHQEIMASACENTKTKRKRDVEVALGSQLCKRNTSNPNNHNVEECDCESEPGPKFSLKTFKEYADVFKNQYFNYNDKKKFIGSSIKLAIPEQSEPSVENIEGEYGRIVQNPSEEIEVLCCNKLEAGVFSSGFPTVSDSVGANAYPEYLKSGWNLNNILSGSLLSFESPDVLCNLDPNVSVGMCFSAVNWEMQLSCSILKAEGIPVYRCVQYPREFVLVFPGAYHSGFDCGFNCSESVSFAPLEWLLHGQNVVELYREQRKKTLFSYDKLLLGAANEAVRAQWETGLCMKSTSSDSLTYKGAYIKNEFLRKAFNFRIQSEILKRKFLTSSLLSQRMDEKFYATCRRECSICLCDLHLSAVGCSCSNDKFACLDHAKHFCSCTWSNKIFFYRYEISELNVLRQALEGKLSAVFKWSKEYLGLTLNSAASKRSKARSENVSGSTFPSQDLHTKKSISQTAANESKEKLRQLQEILNASKKKQNEEVSQVSQTYGGTHSSYDTHSKTKTDLPQSSCASGAKGISSAGTKIDTEMVGSKVTISKKGDPKASKVSSVTNLRYLSFLQEHVLLDVSSDSTSTSSSDSEVA 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00062 795 SMART cupin_9 358 468 IPR003347 -
Vium3906g00062 795 MobiDBLite consensus disorder prediction 688 731 - -
Vium3906g00062 795 Pfam JmjC domain, hydroxylase 401 451 IPR003347 -
Vium3906g00062 795 Pfam jmjN domain 142 175 IPR003349 -
Vium3906g00062 795 Gene3D Cupin 126 403 - -
Vium3906g00062 795 SUPERFAMILY Clavaminate synthase-like 264 494 - -
Vium3906g00062 795 ProSiteProfiles JmjC domain profile. 302 468 IPR003347 -
Vium3906g00062 795 MobiDBLite consensus disorder prediction 80 108 - -
Vium3906g00062 795 Coils Coil 670 694 - -
Vium3906g00062 795 Gene3D Cupin 404 497 - -
Vium3906g00062 795 SMART JmjN_1 140 181 IPR003349 -
Vium3906g00062 795 Pfam C5HC2 zinc finger 559 609 IPR004198 -
Vium3906g00062 795 MobiDBLite consensus disorder prediction 690 730 - -
Vium3906g00062 795 ProSiteProfiles JmjN domain profile. 141 182 IPR003349 -
Vium3906g00062 795 PANTHER LYSINE-SPECIFIC DEMETHYLASE 403 725 - -
Vium3906g00062 795 MobiDBLite consensus disorder prediction 643 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00062 Vium-Chr3906 383314 390448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00062 15 686 JUMONJI Transcription Factor Family AT2G38950 35.762 1.90e-124 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium3906g00062 zf-C5HC2 4.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00062 K11446 - cave:132166310 605.905