Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00061 ATGGAAGAAGCAGGTTATGATTGCCCCAAATTTCAGGAGAACGAAAATCTTGCAGTGCCCCCTGGTTTTGTATCCCTCACATCTTTCATTTTGAGAAAGAGTGGAAATGTTAAGAAAAATGATAACTCTACAGCCTTTCCAGTTGCATCTGAACAAGAGCCAAACTGTATGAAGACTGAACTTGAGACGAATGACATTGATGCTTATAGGCAGGGTCTTATACGTCGGCCATGGATAAACATGGACCCGAGCAACAACCACAAGCCTAAGGAATCTCACACAAAGCATCTTCCTATGAACCTACCTATAAATCCTAGTCGTCCAAAGGGGACCATACGGGGATGTCCTAGTTGCAATGATTGTGTGAAGGTAACAGCAAGGTGGCATCCTAAGGATGCAATAAGAGAAGATTTGGAAGAAGCTCCTATCTTCCACCCAACAGAAGAGGAATTCAAAGACACGCTTACATATATTGCAAGTGTACGTTCCAAAGCAGAAACTTATGGAATTTGCCGAATTGTTCCTCCTACTTGCTGGAAACCACCATGCTTTCTTCAGAGAGAACACATATGGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGACACCAAGTTCGGCGAATTGATGGACATCAAGAAATTATGGCCAGTGCTTGTGAAAATACAAAAACCAAGAGAAAAAGAGATGTAGAAGTAGCTTTGGGCTCTCAGCTTTGTAAAAGAAACACTAGCAACCCAAATAACCATAATGTTGAAGAATGTGATTGTGAGTCTGAACCAGGTCCTAAATTCAGTCTCAAAACATTTAAGGAATATGCAGATGTGTTTAAGAACCAGTACTTTAATTACAATGATAAGAAGAAATTCATAGGTTCCAGTATAAAATTAGCTATACCTGAGCAGTCGGAACCATCTGTGGAGAATATTGAGGGTGAATATGGTCGAATTGTTCAAAATCCATCTGAAGAAATTGAGGTGCTTTGTTGTAATAAATTGGAGGCTGGAGTTTTTAGCAGTGGATTTCCTACAGTTTCTGATTCTGTGGGGGCAAACGCTTACCCTGAATATTTGAAATCTGGATGGAACTTGAATAATATTCTTTCTGGTTCCCTTCTTTCGTTTGAAAGCCCTGATGTTTTATGTAACCTAGACCCCAATGTTAGTGTGGGAATGTGCTTCTCTGCTGTCAACTGGAAAGTTGAAGAACACCACTTATACTCATTATCGTACATACATCTGGGTGAACCAAAAGTGTGGTATAGCGTCCCAGGAAGATTTGCTGTTAACTTTGAAACAATTTGGAAAAAGTATCTACCAGATTTGCATGCAGGAAAGCATCATATGCATGATACTATGGAGATGCAATTATCATGCTCCATATTGAAGGCAGAGGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTCATGGACAGAACGTTGTAGAGCTTTATCGTGAACAGAGGAAGAAGACATTATTTTCATATGACAAGCTTTTATTAGGAGCTGCAAATGAAGCTGTCAGGGCCCAGTGGGAAACTGGTCTATGCATGAAGAGCACATCCTCCGACAGCTTAACATATAAAGGTGCCTATATAAAAAATGAGTTCTTAAGAAAAGCTTTCAACTTTCGCATTCAGAGTGAAATTTTGAAGAGGAAATTTCTTACGAGTTCATTACTATCACAAAGAATGGATGAAAAATTTTATGCCACCTGTAGGAGGGAATGCAGTATTTGCCTGTGTGATTTACACCTATCTGCTGTTGGGTGTTCATGTTCAAATGACAAGTTTGCATGTCTTGATCATGCAAAACATTTTTGTTCTTGCACTTGGAGCAACAAAATTTTCTTCTACCGTTATGAAATCAGTGAGTTAAATGTTCTTCGTCAAGCTTTGGAGGGGAAATTAAGTGCAGTCTTTAAATGGTCCAAAGAGTATCTCGGATTAACTCTGAACTCTGCTGCCTCCAAGAGATCAAAAGCACGCTCAGAAAATGTTAGTGGTTCAACCTTCCCTTCCCAAGACTTGCATACGAAAAAATCTATATCCCAGACAGCAGCAAATGAATCAAAAGAGAAACTACGTCAATTGCAGGAAATATTGAATGCATCAAAGAAAAAACAAAATGAAGAGGTTTCCCAGGTCTCGCAGACTTATGGTGGCACTCACAGTTCATATGACACTCATTCGAAAACGAAGACAGATTTGCCTCAGTCAAGCTGTGCAAGTGGTGCGAAAGGAATCAGTTCTGCTGGCACCAAAATTGATACGGAGATGGTTGGGAGCAAGGTAACAATTTCAAAGAAAGGAGATCCAAAAGCATCGAAAGTCTCTTCAGTTACAAACTTACGGTACTTGTCTTTTCTACAAGAACATGTGTTACTTGATGTTTCATCTGATAGTACGAGTACCTCTTCATCGGACTCTGAAGTTGCATAA 2445 0.398 MEEAGYDCPKFQENENLAVPPGFVSLTSFILRKSGNVKKNDNSTAFPVASEQEPNCMKTELETNDIDAYRQGLIRRPWINMDPSNNHKPKESHTKHLPMNLPINPSRPKGTIRGCPSCNDCVKVTARWHPKDAIREDLEEAPIFHPTEEEFKDTLTYIASVRSKAETYGICRIVPPTCWKPPCFLQREHIWEKSEFVAQIQRIDGHQVRRIDGHQEIMASACENTKTKRKRDVEVALGSQLCKRNTSNPNNHNVEECDCESEPGPKFSLKTFKEYADVFKNQYFNYNDKKKFIGSSIKLAIPEQSEPSVENIEGEYGRIVQNPSEEIEVLCCNKLEAGVFSSGFPTVSDSVGANAYPEYLKSGWNLNNILSGSLLSFESPDVLCNLDPNVSVGMCFSAVNWKVEEHHLYSLSYIHLGEPKVWYSVPGRFAVNFETIWKKYLPDLHAGKHHMHDTMEMQLSCSILKAEVSFAPLEWLLHGQNVVELYREQRKKTLFSYDKLLLGAANEAVRAQWETGLCMKSTSSDSLTYKGAYIKNEFLRKAFNFRIQSEILKRKFLTSSLLSQRMDEKFYATCRRECSICLCDLHLSAVGCSCSNDKFACLDHAKHFCSCTWSNKIFFYRYEISELNVLRQALEGKLSAVFKWSKEYLGLTLNSAASKRSKARSENVSGSTFPSQDLHTKKSISQTAANESKEKLRQLQEILNASKKKQNEEVSQVSQTYGGTHSSYDTHSKTKTDLPQSSCASGAKGISSAGTKIDTEMVGSKVTISKKGDPKASKVSSVTNLRYLSFLQEHVLLDVSSDSTSTSSSDSEVA 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00061 814 Gene3D Cupin 126 471 - -
Vium3906g00061 814 Pfam JmjC domain, hydroxylase 390 457 IPR003347 -
Vium3906g00061 814 MobiDBLite consensus disorder prediction 80 108 - -
Vium3906g00061 814 MobiDBLite consensus disorder prediction 662 692 - -
Vium3906g00061 814 ProSiteProfiles JmjC domain profile. 358 505 IPR003347 -
Vium3906g00061 814 PANTHER LYSINE-SPECIFIC DEMETHYLASE 468 744 - -
Vium3906g00061 814 SMART cupin_9 358 487 IPR003347 -
Vium3906g00061 814 MobiDBLite consensus disorder prediction 709 749 - -
Vium3906g00061 814 SMART JmjN_1 140 181 IPR003349 -
Vium3906g00061 814 Pfam C5HC2 zinc finger 578 628 IPR004198 -
Vium3906g00061 814 SUPERFAMILY Clavaminate synthase-like 264 513 - -
Vium3906g00061 814 MobiDBLite consensus disorder prediction 707 750 - -
Vium3906g00061 814 ProSiteProfiles JmjN domain profile. 141 182 IPR003349 -
Vium3906g00061 814 Pfam jmjN domain 142 175 IPR003349 -
Vium3906g00061 814 Coils Coil 689 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00061 Vium-Chr3906 383314 390448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00061 8 658 JUMONJI Transcription Factor Family AT1G08620 41.560 6.03e-154 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium3906g00061 JmjC 3.4e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00061 K11446 - gmx:100804864 1117.83