Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00060 ATGGAAGAAGCAGGTTATGATTGCCCCAAATTTCAGGAGAACGAAAATCTTGCAGTGCCCCCTGGTTTTGTATCCCTCACATCTTTCATTTTGAGAAAGAGTGGAAATGTTAAGAAAAATGATAACTCTACAGCCTTTCCAGTTGCATCTGAACAAGAGCCAAACTGTATGAAGACTGAACTTGAGACGAATGACATTGATGCTTATAGGCAGGGTCTTATACGTCGGCCATGGATAAACATGGACCCGAGCAACAACCACAAGCCTAAGGAATCTCACACAAAGCATCTTCCTATGAACCTACCTATAAATCCTAGTCGTCCAAAGGGGACCATACGGGGATGTCCTAGTTGCAATGATTGTGTGAAGGTAACAGCAAGGTGGCATCCTAAGGATGCAATAAGAGAAGATTTGGAAGAAGCTCCTATCTTCCACCCAACAGAAGAGGAATTCAAAGACACGCTTACATATATTGCAAGTGTACGTTCCAAAGCAGAAACTTATGGAATTTGCCGAATTGTTCCTCCTACTTGCTGGAAACCACCATGCTTTCTTCAGAGAGAACACATATGGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGACACCAAGTTCGGCGAATTGATGGACATCAAGAAATTATGGCCAGTGCTTGTGAAAATACAAAAACCAAGAGAAAAAGAGATGTAGAAGTAGCTTTGGGCTCTCAGCTTTGTAAAAGAAACACTAGCAACCCAAATAACCATAATGTTGAAGAATGTGATTGTGAGTCTGAACCAGGTCCTAAATTCAGTCTCAAAACATTTAAGGAATATGCAGATGTGTTTAAGAACCAGTACTTTAATTACAATGATAAGAAGAAATTCATAGGTTCCAGTATAAAATTAGCTATACCTGAGCAGTCGGAACCATCTGTGGAGAATATTGAGGGTGAATATGGTCGAATTGTTCAAAATCCATCTGAAGAAATTGAGGTGCTTTGTTGTAATAAATTGGAGGCTGGAGTTTTTAGCAGTGGATTTCCTACAGTTTCTGATTCTGTGGGGGCAAACGCTTACCCTGAATATTTGAAATCTGGATGGAACTTGAATAATATTCTTTCTGGTTCCCTTCTTTCGTTTGAAAGCCCTGATGTTTTATGTAACCTAGACCCCAATGTTAGTGTGGGAATGTGCTTCTCTGCTGTCAACTGGAAAGTTGAAGAACACCACTTATACTCATTATCGTACATACATCTGGGTGAACCAAAAGTGTGGTATAGCGTCCCAGGAAGATTTGCTGTTAACTTTGAAACAATTTGGAAAAAGTATCTACCAGATTTGCATGCAGGAAAGCATCATATGCATGATACTATGGAGATGCAATTATCATGCTCCATATTGAAGGCAGAGGGTATACCTGTCTATCGTTGTGTTCAGTATCCTCGTGAATTTGTTCTCGTCTTCCCTGGGGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAATCAGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTCATGGACAGAACGTTGTAGAGCTTTATCGTGAACAGAGGAAGAAGACATTATTTTCATATGACAAGCTTTTATTAGGAGCTGCAAATGAAGCTGTCAGGGCCCAGTGGGAAACTGGTCTATGCATGAAGAGCACATCCTCCGACAGCTTAACATATAAAGTTTCGCATTCAGAGTGA 1713 0.4046 MEEAGYDCPKFQENENLAVPPGFVSLTSFILRKSGNVKKNDNSTAFPVASEQEPNCMKTELETNDIDAYRQGLIRRPWINMDPSNNHKPKESHTKHLPMNLPINPSRPKGTIRGCPSCNDCVKVTARWHPKDAIREDLEEAPIFHPTEEEFKDTLTYIASVRSKAETYGICRIVPPTCWKPPCFLQREHIWEKSEFVAQIQRIDGHQVRRIDGHQEIMASACENTKTKRKRDVEVALGSQLCKRNTSNPNNHNVEECDCESEPGPKFSLKTFKEYADVFKNQYFNYNDKKKFIGSSIKLAIPEQSEPSVENIEGEYGRIVQNPSEEIEVLCCNKLEAGVFSSGFPTVSDSVGANAYPEYLKSGWNLNNILSGSLLSFESPDVLCNLDPNVSVGMCFSAVNWKVEEHHLYSLSYIHLGEPKVWYSVPGRFAVNFETIWKKYLPDLHAGKHHMHDTMEMQLSCSILKAEGIPVYRCVQYPREFVLVFPGAYHSGFDCGFNCSESVSFAPLEWLLHGQNVVELYREQRKKTLFSYDKLLLGAANEAVRAQWETGLCMKSTSSDSLTYKVSHSE 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00060 570 Gene3D Cupin 126 506 - -
Vium3906g00060 570 MobiDBLite consensus disorder prediction 80 108 - -
Vium3906g00060 570 SUPERFAMILY Clavaminate synthase-like 263 548 - -
Vium3906g00060 570 ProSiteProfiles JmjC domain profile. 358 522 IPR003347 -
Vium3906g00060 570 PANTHER LYSINE-SPECIFIC DEMETHYLASE 136 556 - -
Vium3906g00060 570 SMART cupin_9 358 522 IPR003347 -
Vium3906g00060 570 Pfam jmjN domain 142 175 IPR003349 -
Vium3906g00060 570 ProSiteProfiles JmjN domain profile. 141 182 IPR003349 -
Vium3906g00060 570 SMART JmjN_1 140 181 IPR003349 -
Vium3906g00060 570 Pfam JmjC domain, hydroxylase 390 505 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00060 Vium-Chr3906 383310 389432 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00060 8 566 JUMONJI Transcription Factor Family AT1G08620 43.945 1.64e-134 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium3906g00060 JmjC 2.8e-31 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00060 K11446 - gmx:100804864 881.708