Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00059 ATGGGTCTCAGAGACATTGGTGCTTCACTGCCTCCTGGCTTTCGCTTTTATCCCAGTGACGAGGAATTGGTCTGCCATTACCTCTACAAAAAGATCGCAAATGAGGAACTTCTCAAGGGTACCTTGGTGGAAATCGACCTCCATATATGTGAACCGTGGCAACTTCCAGAGGTGGCGAAGCTGAATGCGAACGAGTGGTACTTCTTCAGCTTCCGGGACCGCAAATACGCGACGGGGTTTCGAACAAACCGGGCAACAACTTCAGGGTATTGGAAAGCAACAGGAAAAGATCGAACGGTGGTAGATCCGACCACGCAAGAGGTTGTAGGGATGAGGAAAACGTTGGTGTTCTACAGGAACAGAGCTCCAAATGGCATCAAAACTGGGTGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCTCCAAAGGAGGACTGGGTGCTGTGTAGAGTCTTCCACAAAAGCAAAGAAGATAACAGTTCGAAACTCATGTACGATTATGATACAACACCTCAATCCCTAACCATGGCGTCGTCATCTCCCACCATGAACAGATTTTCCACCTCTTTCCCTTCCTCCATGCCATTGCCAGCCAACCACCACCATCATCACCATTTCAACACAAGCCAAAACTCTTCTTTCATGGATCTTCTTCACTTCTCTCGAGACACCAACACCAACAACACCATCGTTACTCAAATTACTTCCAAAGGTGATGATGGATATGGTTTCTTATGGGACATGGATTTGGAAGAAAATAGCTTACAAGATGGCGTGGCTTCAAACTTGGATGCAATAACCTTCGAGGTTGATAATAATAATAGCAATGAAAACAATATGGTATTCCTATAG 858 0.4615 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEELLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVVDPTTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDNSSKLMYDYDTTPQSLTMASSSPTMNRFSTSFPSSMPLPANHHHHHHFNTSQNSSFMDLLHFSRDTNTNNTIVTQITSKGDDGYGFLWDMDLEENSLQDGVASNLDAITFEVDNNNSNENNMVFL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00059 285 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Vium3906g00059 285 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Vium3906g00059 285 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 220 - -
Vium3906g00059 285 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Vium3906g00059 285 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00059 Vium-Chr3906 366695 372488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00059 6 159 NAC Transcription Factor Family AT1G56010 58.025 4.54e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium3906g00059 NAM 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00059 - - gmx:100782751 461.07