Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00052 ATGGATTCTGCTAGGAGTTGGTTACAGAAATTTCAACCACGAGATAAATTAAGAGCCTCAACTAGAAAGAAAGACGATACTCATGGTGGGAATGAAGCTCCAAACGGGCCTCTGGACGAAGCAGCTCTTTCCAATATCACAAAGCAGAAGGTTGCAGCAGCTAAACAATACATTGAAAACCACTATAAGGAACAGATGAAGAACCTTCAAGAAAGGAAAGAACGTCGAACCATCTTGGAAAAGAAGTTGGCAGATGCTGATGTATCTGAGGAAGATCAAAATAACCTACTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGTCTTCAAAGGCACAAGATGGGTGTAGATGATTTTGAGTTATTGACCATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTTTGTAAGGAAAAGACTACAGATCATGTATTTGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTAGAACATGTCAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTTAAACTTTATTGTTCTTTCCAAGATGAGGAGTATTTATATCTTATTATGGAGTATCTACCTGGCGGGGATATGATGACTCTACTAATGAGAAAGGATACCTTGACCGAAGATGAAGCCAGATTTTATGTGGGAGAAACAGTTCTAGCCATTGAATCAATACATAAACACAATTATATACATAGGGATATTAAGCCTGATAATTTATTACTTGATAAATATGGACACTTGAGACTGTCAGATTTTGGGTTATGTAAACCATTAGACTGTAGTACACTTGAAGAAACGGATTTTTCTGCTGGTCAAAATGCAAATGGATTTCCTCAAAGTGATGAATCTGGACGCACACAACAAGAACAATTGCAACACTGGCAAAAGAATAGGAGGACACTTGCTTATTCTACTGTCGGTACACCAGACTATATTGCTCCAGAAGTTCTATTAAAGAAAGGCTACGGGATGGAATGTGATTGGTGGTCACTTGGTGCTATTATGTATGAAATGTTGGTGGGATATCCGCCTTTTTATTCTGACGATCCAATGTCAACATGTAGAAAGATAGTAAATTGGAAATCTCATTTAAAGTTTCCTGAAGAAGCAAGGTTATCTGTGGAGGCTAAAGATCTTATCAGTAAGCTTTTATGTAATGTGAACCAGAGACTGGGCTCAAATGGTGCAGATGAAATAAAGGCTCATCCATTTTTCAATGGTGTTGAGTGGGAAAGATTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAACGATGAGTTAGACACTCAAAATTTTGAAAAGTTTGATGAGTCTGACCACCAGACTCAATCAGCATCAAGAACTGGCGGTCCATGGAGAAAGATGCTTTCATCTAAAGACTTGAATTTTGTGGGATACACATACAAAAACTTTGAAATTGTCAACGATTATCAAGTTCCTGGGATGACTGAATTAAGAAAGAAAACTTCTAAAGTAAAGAAGCCATCTGTTAAGTCTCTTTTTGATTGTGATTCTGACACATCTGAAGCATGTGCATCTGAGGCTTCTGATTCAACTGCAAAGATTGATGATCAACATACTCATTCAGAATAG 1626 0.3801 MDSARSWLQKFQPRDKLRASTRKKDDTHGGNEAPNGPLDEAALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCKEKTTDHVFAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLRLSDFGLCKPLDCSTLEETDFSAGQNANGFPQSDESGRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSVEAKDLISKLLCNVNQRLGSNGADEIKAHPFFNGVEWERLYQMEAAFIPEVNDELDTQNFEKFDESDHQTQSASRTGGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMTELRKKTSKVKKPSVKSLFDCDSDTSEACASEASDSTAKIDDQHTHSE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00052 541 Pfam Protein kinase C terminal domain 434 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vium3906g00052 541 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Vium3906g00052 541 FunFam Non-specific serine/threonine protein kinase 314 433 - -
Vium3906g00052 541 SMART pkinase_C_6 416 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium3906g00052 541 Pfam Protein kinase domain 121 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3906g00052 541 MobiDBLite consensus disorder prediction 9 30 - -
Vium3906g00052 541 MobiDBLite consensus disorder prediction 1 41 - -
Vium3906g00052 541 MobiDBLite consensus disorder prediction 279 299 - -
Vium3906g00052 541 ProSiteProfiles Protein kinase domain profile. 120 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3906g00052 541 CDD MobB_NDR_LATS-like 54 115 - -
Vium3906g00052 541 PANTHER SERINE/THREONINE-PROTEIN KINASE 38 466 - -
Vium3906g00052 541 ProSiteProfiles AGC-kinase C-terminal domain profile. 416 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium3906g00052 541 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Vium3906g00052 541 Gene3D Phosphorylase Kinase; domain 1 118 444 - -
Vium3906g00052 541 Gene3D Transferase(Phosphotransferase) domain 1 204 433 - -
Vium3906g00052 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Vium3906g00052 541 SUPERFAMILY Protein kinase-like (PK-like) 93 460 IPR011009 -
Vium3906g00052 541 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Vium3906g00052 541 CDD STKc_NDR_like 118 480 - -
Vium3906g00052 541 SMART serkin_6 120 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3906g00052 541 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00052 Vium-Chr3906 318801 323641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00052 1 509 AGC Kinase Gene Family AT1G03920 79.395 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vium3906g00052 Pkinase 1.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00052 K08790 - gmx:100783286 968.378