Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00051 ATGGATCATGTTATTGGTGGGAAATTTAAATTGGGAAGGAAAATTGGGAGTGGGTCTTTTGGGGAGCTTTATATTGCTGTTAATATACAAACTGGAGAGGAGGTGGCTATCAAGCTGGAACCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGTATTCCCCATCTCAAGTGGTTTGGAGTAGAGGGAGATTACAATGCGATGGCAATTGATCTTCTTGGACCAAGTCTGGAAGATTTATTCAATTATTGCAACCGGAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCACTCTAGAGGTTTCCTTCACCGTGACATTAAGCCAGACAATTTTTTGATGGGCCTTGGACGTAAAGCAAACCAGGTTTACATCATCGACTATGGCCTTGCAAAGAAATATAGGGATCTTCAGACACATAGGCACATACCATACAGGGAAAACAAGAACCTTACTGGCACAGCTAGGTATGCAAGTGTTAACACTCATCTTGGAATAGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAAATGTCAACTCCGATAGAGGTGCTTTGCAAATCATATCCCTCAGAGTTTGTATCATATTTTCACTACTGCCGATCCTTGCGGTTTGAAGACAAGCCTGATTATTCATATTTAAAGAGGCTTTTTCGAGATTTATTTATACGAGAAGGCTATCAATTTGACTATGTTTTTGATTGGACTATATTGAAGTATCCACAGATCGGTGGCAGCTCTAGAGGGCGGCATGAAAGTGGCAAGGCAGCTATGCATGCTGGACCATCTGTACAAAAGCCAGAAAAGATATCAGTTGGGAAAGAGATTCGGGAAAAATTCTCTGGTGCTGTTGAAGCTTTCTCCCGGAGGAATCCAACAAGTTCTAGTCCTCGTGGTGATCACTCCAAACATAGGGGTTTTGAGGAAGGAGCAGTGCACAAGGACGTGTATCATGATCAAGAGAAGGGACGTAATTCATCTCGATACGGTAGCAGTTCAAGAAGAGCCATAATCTCATCATCAACCAGGCCAAGTTCATCCGGGGATCATACCGACAGTCGTACTGGCCGGCTCACCTCAAGTTTGAGCCGTCCATCAACAACACATAGAAACATTCAACCTATGTACGAGAGCAAACAACCAACGTACACACGGTCTGGATCTACCAGAGGCAACCGTGACGACCCTCTCCGGAGTTTTGAATTCCTCTCTATCAGGAAGTAA 1389 0.4276 MDHVIGGKFKLGRKIGSGSFGELYIAVNIQTGEEVAIKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNAMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSRGRHESGKAAMHAGPSVQKPEKISVGKEIREKFSGAVEAFSRRNPTSSSPRGDHSKHRGFEEGAVHKDVYHDQEKGRNSSRYGSSSRRAIISSSTRPSSSGDHTDSRTGRLTSSLSRPSTTHRNIQPMYESKQPTYTRSGSTRGNRDDPLRSFEFLSIRK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00051 462 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vium3906g00051 462 CDD STKc_CK1_delta_epsilon 8 282 - -
Vium3906g00051 462 Gene3D Transferase(Phosphotransferase) domain 1 1 336 - -
Vium3906g00051 462 FunFam Putative Casein kinase I 1 85 - -
Vium3906g00051 462 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3906g00051 462 MobiDBLite consensus disorder prediction 325 339 - -
Vium3906g00051 462 PANTHER CASEIN KINASE-RELATED 9 418 - -
Vium3906g00051 462 MobiDBLite consensus disorder prediction 301 462 - -
Vium3906g00051 462 MobiDBLite consensus disorder prediction 351 380 - -
Vium3906g00051 462 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3906g00051 462 MobiDBLite consensus disorder prediction 381 445 - -
Vium3906g00051 462 FunFam Casein kinase 1-like protein 1 330 - -
Vium3906g00051 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vium3906g00051 462 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3906g00051 462 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vium3906g00051 462 MobiDBLite consensus disorder prediction 446 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00051 Vium-Chr3906 303250 309787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00051 2 213 Miscellaneous Gene Families AT1G29230 27.854 8.17e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vium3906g00051 Pkinase 4.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00051 K08960 - gmx:100781494 844.343