Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00043 ATGGGGAGTAGGGTTAAGCAGGGGAGGAGATTGCGGAAGATGATGAAGTGTCTGTGTGTGAGGGAGCCGGTGAAAGGTGAGGATGAAAGGGTTCCTTCCTCGGAATCTCTTGGAATCAGGGAATTTTATTCATCAACAGCGAGTGGGCGTTCTGGCCTCGATGGAGAAATTGAGATGTTGGGGTCTGATTCTAGTAAAATAGACGAAACTGAATTGTCTTTGCGTGAGAGTGGCATCTTGGACAATGAGGAAGCTAGTGCTCTGTTAGGAAGAGATGAATATCATAAAGGGAATATAGAAGCTGCTTTACGTGTTTATGAGAAAATAAATATAGGCGCTGTGACTTCCAAGATGAAAATTTCCCTTGCGAAAAGCAGAGAACGCCCCAAAAAGCACTCCCATTATTATGCTACTCCCCCAATGTCCATGTACACGGCTGGATTACTGTTGGAAGCAATTTTCCTAAAATCGAAATGCTTACAGGCTCTAGGGAGGTTTAAAGAAGCTGCCCAAACTTGTATAGTTATTCTGGACACATTTGAATCTTCATTCCCTGAAGGCTTGCCTCAAAACTTCGGCAACGAGGGTAAATTGCAGGAGACTTTGAGTAAGGTAGTTGAGCTACTTCCAGATTTGTGGAAATTTGCTGATTCTCCCCGTGATGTTATTTTGTCTTACCGGCGTGCACTCCTACACAAATGGAATCTTGATGCCAAAACCATAGCAAGGATTCAGAAAGAATTTGTTGTTTTTCTTCTGTATAGTGGAGGGGAAGCAATCCCCTCGAATCTTCGTTCCCATATGGACAACTCTTTTGTACCTAGAAATAACTTAGAAGAGGCTATACTCCTTCTAATGATTTTGCTAAGAAAAATTACTCTAAATAAACTTGAGTGGGATCCATCAATTTTGGATCACCTTGCATTTGCCCTATCTGTTTCAGGGGACTTGACAGCTTTAGCCAATCAATGGGAAGAATTACTCCCTGGGACTGTCAATCGTAGAGAAAGATACCAGGCCTTATCACTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCATTGAATCTTCTTAGAAAATTGTTGAGTAAAGAGGACCCAAAACATGTTCCCTCTTTGTTAATTGCTTCTAAGATTTGTTGTGAGAACCCTGATCTTGCAAAAGATGGGGCAAGCTTAGCTCGCAAGGTGCTTGAGAACTTGGATGGGAAATGTAATCAGTTGGAAGGTCTTTCTAGTTGCTTACTTGGTGTTTCACTTTCAACACACTCAAAATTTTGTATTTCTAATTCTGAGAGGGTTGAGAGACAATCCGAGGCACTACATTCTCTGGAAACTGCACACAAAGTGACTGGAATGAGTAACCCCCTTGTAATATACAGTTTGAGTTTAGAATATGCAGAGCAAAGGAAGTTGGATGCGGCACTTCATTATTCAAGATGCTTTCTAAACTTGGAAGCTGGGTCTAGTGTTAAAGGGTGGTTATTGTTAGCCCGAATATTATCAGCTCAAAAACAGTTCTTAGAGTCTGAATCTATCCTCAATGAGGCCTTGGATCAGACTGGAATATGGGATCAAGGAGAGTTACTACGAACAAAAGCTAAACTACAAATAGTGCAGGGCCAGTTAAAAACTGCCATTGAAACATATACTCACCTTCTTGCTATTCTCCTAGTTCAGAGAAAGACGTTTGGTTCAAGGAAGACGCTATATAAGGACTACATAGATCATGCTAGGAACATGGAAATAGAAATATGGCATGATCTTGCGTATGTTTACATAAGTCTGTCACGATGGCATGATGCAGAGGTAGTATGTACGAAGCAAAGGGGGTTCACGAAGAGGCTTTAA 1851 0.4138 MGSRVKQGRRLRKMMKCLCVREPVKGEDERVPSSESLGIREFYSSTASGRSGLDGEIEMLGSDSSKIDETELSLRESGILDNEEASALLGRDEYHKGNIEAALRVYEKINIGAVTSKMKISLAKSRERPKKHSHYYATPPMSMYTAGLLLEAIFLKSKCLQALGRFKEAAQTCIVILDTFESSFPEGLPQNFGNEGKLQETLSKVVELLPDLWKFADSPRDVILSYRRALLHKWNLDAKTIARIQKEFVVFLLYSGGEAIPSNLRSHMDNSFVPRNNLEEAILLLMILLRKITLNKLEWDPSILDHLAFALSVSGDLTALANQWEELLPGTVNRRERYQALSLCYYGAGKDLVALNLLRKLLSKEDPKHVPSLLIASKICCENPDLAKDGASLARKVLENLDGKCNQLEGLSSCLLGVSLSTHSKFCISNSERVERQSEALHSLETAHKVTGMSNPLVIYSLSLEYAEQRKLDAALHYSRCFLNLEAGSSVKGWLLLARILSAQKQFLESESILNEALDQTGIWDQGELLRTKAKLQIVQGQLKTAIETYTHLLAILLVQRKTFGSRKTLYKDYIDHARNMEIEIWHDLAYVYISLSRWHDAEVVCTKQRGFTKRL 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00043 616 PANTHER PROTEIN NPG1 15 610 IPR043376 -
Vium3906g00043 616 SUPERFAMILY TPR-like 436 608 IPR011990 GO:0005515
Vium3906g00043 616 Gene3D Tetratricopeptide repeat domain 67 609 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00043 Vium-Chr3906 244428 248520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00043 9 610 Calmodulin-binding Proteins AT4G28600 52.589 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00043 K21843 - gmx:100784353 1005.36