Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00042 ATGGGGAGTAGGGTTAAGCAGGGGAGGAGATTGCGGAAGATGATGAAGTGTCTGTGTGTGAGGGAGCCGGTGAAAGGTGAGGATGAAAGGGTTCCTTCCTCGGAATCTCTTGGAATCAGGGAATTTTATTCATCAACAGCGAGTGGGCGTTCTGGCCTCGATGGAGAAATTGAGATGTTGGGGTCTGATTCTAGTAAAATAGACGAAACTGAATTGTCTTTGCGTGAGAGTGGCATCTTGGACAATGAGGAAGCTAGTGCTCTGTTAGGAAGAGATGAATATCATAAAGGGAATATAGAAGCTGCTTTACGTGTTTATGAGAAAATAAATATAGGCGCTGTGACTTCCAAGATGAAAATTTCCCTTGCGAAAAGCAGAGAACGCCCCAAAAAGCACTCCCATTATTATGCTACTCCCCCAATGTCCATGTACACGGCTGGATTACTGTTGGAAGCAATTTTCCTAAAATCGAAATGCTTACAGGCTCTAGGGAGGTTTAAAGAAGCTGCCCAAACTTGTATAGTTATTCTGGACACATTTGAATCTTCATTCCCTGAAGGCTTGCCTCAAAACTTCGGCAACGAGGGTAAATTGCAGGAGACTTTGAGTAAGGTAGTTGAGCTACTTCCAGATTTGTGGAAATTTGCTGATTCTCCCCGTGATGTTATTTTGTCTTACCGGCGTGCACTCCTACACAAATGGAATCTTGATGCCAAAACCATAGCAAGGATTCAGAAAGAATTTGTTGTTTTTCTTCTGTATAGTGGAGGGGAAGCAATCCCCTCGAATCTTCGTTCCCATATGGACAACTCTTTTGTACCTAGAAATAACTTAGAAGAGGCTATACTCCTTCTAATGATTTTGCTAAGAAAAATTACTCTAAATAAACTTGAGTGGGATCCATCAATTTTGGATCACCTTGCATTTGCCCTATCTGTTTCAGGGGACTTGACAGCTTTAGCCAATCAATGGGAAGAATTACTCCCTGGGACTGTCAATCGTAGAGAAAGATACCAGGCCTTATCACTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCATTGAATCTTCTTAGAAAATTGTTGAGTAAAGAGGACCCAAAACATGTTCCCTCTTTGTTAATTGCTTCTAAGATTTGTTGTGAGAACCCTGATCTTGCAAAAGATGGGGCAAGCTTAGCTCGCAAGGTGCTTGAGAACTTGGATGGGAAATGTAATCAGTTGGAAGGTCTTTCTAGTTGCTTACTTGGTGTTTCACTTTCAACACACTCAAAATTTTGTATTTCTAATTCTGAGAGGGTTGAGAGACAATCCGAGGCACTACATTCTCTGGAAACTGCACACAAAGTGACTGGAATGAGTAACCCCCTTGTAATATACAGTTTGAGTTTAGAATATGCAGAGCAAAGGAAGTTGGATGCGGCACTTCATTATTCAAGATGCTTTCTAAACTTGGAAGCTGGGTCTAGTGTTAAAGGGTGGTTATTGTTAGCCCGAATATTATCAGCTCAAAAACAGTTCTTAGAGTCTGAATCTATCCTCAATGAGGCCTTGGATCAGACTGGAATATGGGATCAAGGAGAGTTACTACGAACAAAAGCTAAACTACAAATAGTGCAGGGCCAGTTAAAAACTGCCATTGAAACATATACTCACCTTCTTGCTATTCTCCTAGTTCAGAGAAAGACGTTTGGTTCAAGGAAGACGCTATATAAGGACTACATAGATCATGCTAGGAACATGGAAATAGAAATATGGCATGATCTTGCGTATGTTTACATAAGTCTGTCACGATGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAATAGGTAGTATGTACGAAGCAAAGGGGGTTCACGAAGAGGCTTTAAGAGCTTTTCGTGATGCTTTGAATATAGATCCCGGACATGTCCCTAGCTTGATCTCTACTGCGGTGGTCCTTAGGCAGTGCAGTAATCGGTCAAATCCTGCTATCAGAAGCTTTCTGATGGATGCACTACGGCATGACAGATATAACGCTTCTGCATGGTATAATCTTGGCATTTTCCACAAGGACGAGGGTACAATGCTAGAAGCTGCAGAATGTTTTGAGACAGCCAACTTTCTTGAAGAATCGGCTCCAGTTGAACCTTTCAGATGA 2181 0.4182 MGSRVKQGRRLRKMMKCLCVREPVKGEDERVPSSESLGIREFYSSTASGRSGLDGEIEMLGSDSSKIDETELSLRESGILDNEEASALLGRDEYHKGNIEAALRVYEKINIGAVTSKMKISLAKSRERPKKHSHYYATPPMSMYTAGLLLEAIFLKSKCLQALGRFKEAAQTCIVILDTFESSFPEGLPQNFGNEGKLQETLSKVVELLPDLWKFADSPRDVILSYRRALLHKWNLDAKTIARIQKEFVVFLLYSGGEAIPSNLRSHMDNSFVPRNNLEEAILLLMILLRKITLNKLEWDPSILDHLAFALSVSGDLTALANQWEELLPGTVNRRERYQALSLCYYGAGKDLVALNLLRKLLSKEDPKHVPSLLIASKICCENPDLAKDGASLARKVLENLDGKCNQLEGLSSCLLGVSLSTHSKFCISNSERVERQSEALHSLETAHKVTGMSNPLVIYSLSLEYAEQRKLDAALHYSRCFLNLEAGSSVKGWLLLARILSAQKQFLESESILNEALDQTGIWDQGELLRTKAKLQIVQGQLKTAIETYTHLLAILLVQRKTFGSRKTLYKDYIDHARNMEIEIWHDLAYVYISLSRWHDAEVCLSKSKAIKLYSASRCHAIGSMYEAKGVHEEALRAFRDALNIDPGHVPSLISTAVVLRQCSNRSNPAIRSFLMDALRHDRYNASAWYNLGIFHKDEGTMLEAAECFETANFLEESAPVEPFR 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00042 726 Gene3D Tetratricopeptide repeat domain 270 570 IPR011990 GO:0005515
Vium3906g00042 726 ProSiteProfiles TPR repeat profile. 687 720 IPR019734 GO:0005515
Vium3906g00042 726 ProSiteProfiles TPR repeat profile. 617 650 IPR019734 GO:0005515
Vium3906g00042 726 SUPERFAMILY TPR-like 436 556 IPR011990 GO:0005515
Vium3906g00042 726 PANTHER PROTEIN NPG1 15 726 IPR043376 -
Vium3906g00042 726 SMART tpr_5 491 524 IPR019734 GO:0005515
Vium3906g00042 726 SMART tpr_5 687 720 IPR019734 GO:0005515
Vium3906g00042 726 SMART tpr_5 583 616 IPR019734 GO:0005515
Vium3906g00042 726 SMART tpr_5 617 650 IPR019734 GO:0005515
Vium3906g00042 726 Pfam Tetratricopeptide repeat 618 649 IPR019734 GO:0005515
Vium3906g00042 726 SUPERFAMILY TPR-like 528 713 IPR011990 GO:0005515
Vium3906g00042 726 Gene3D Tetratricopeptide repeat domain 571 721 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00042 Vium-Chr3906 243998 248520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00042 9 726 Calmodulin-binding Proteins AT4G28600 53.523 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00042 K21843 - gmx:100784353 1228.39