Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00036 ATGGACGATTCCACAAAACCTAACGCCGGCAAAACCAAACTTCTCAATCCATGGATGCTTCACTTCCAGAAACTCGCTCTTGAACTCAAGTGTCCTCTCTGTTTGAGTTTATTCAAGAGGCCGGTGTTACTTCCTTGCAACCACCTTTTCTGCGATTCATGCTTAGCTGATTGCGTAACAGCTGGTGCTGGTTCTGAATGTGCTGCTTGTAATGCAAAGTACGCTCAAACAGATGTAAGGCACGTGCCTTTCGTGGAAAATGTGGTAGCAATATATAAAAGCTTGGAGGCCACCTTTTGTGCAAGTTTGTTTCATAAACATTCTTCTGGTGATGAGAGGGTTTTGGAGCCATGCTCGGCAATTCTTAATTCAACTTCTAGCAGTATACAAGCTGGCAAACTTCCTCTGAATTTCCCTAATTTGAACAAGGTTGGGGTTGTCAAGAATCTCAAATCCAAGATTGCATTTCATGATAAAGCTGAAGAGCTTGAGTTGTCTCATGGGAGAGGAAAGCCTAATCCGATGCAATCTTCCCAGATGGAAATGGATGTGAATCAAGTGACACAATCAGCCCCAGATAGCCCTCCTTTTTGTGATACCAAAGGTTCAGATAATGACTGCAGTGATCAAGACAGTGAGCATCCACTACCTCCTGATAGACTGGGAAACTCTTCCTTAAAGAGAGCTTGTACAGGAAATGGAAATTTGAAAGAGAAAATGGGACAACTAAGGTCAGAAAGTTCAGCCTCTGAAACTGAGGGTCTTGGAAGGGATCCCAAGAGACAGAAAGTTCAGCCTACAGATGCTCCAAATGACTTTACTCCAACTGGAAGTATCTGTTCATTTTGCCAATCTTCCAAAACCTCTGAGGCTACTGGACCAATGCTGCATTATGCCAATGGAAACTTAGTTACTGGAGATGCAGCAATGAAGCCAAATGTTATACCTGTGCATAGAGTTTGCATTGACTGGGCACCACAAGTGTACTTTGTTGATGAAGTGGTTAAGAATCTCAAGGCGGAATTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGTTGCTATGTCAAATCATGCAGAAGAACTTATCATGTTACTTGTGCACTTGACATCTCAACATGTCGTTGGGATCATGAGGATTTTCTTTTGCTCTGCCCCTTCCATTCAAACGTCAAATTTCCATGTGAGAAATCAAGATCTAAGAAGCAGGCAGCTCGGAAGCATCCCAATTTGCCTAATTTGCCATCGCACCACTCAAATACTCTTGAAGCTTCACAAGATGATGGTAAAAATTTGATTTTCTGTGGATCCGCGTTAACAAATGAGGAAAAGGTACTTTTGCTCAATTATGCAAGTAAGGTTGGTGCAACTGTGACGAAATTCTGGACATCTAATGTTACACATGTAATAGCATCAACTGATGCTAATGGAGCATGCTCTAGGACATTGAAAGTTCTCATGGCTATTCTAAATGGACGATGGGTACTAAAACTGGATTGGATAAAAGCATGCATGGAAGAGAAAAACCCCGTAGAAGAAGAACCATATGAAATTAGTGTTGACAACCAAGGGTGTCAAGGTGGCCCAAGAGCTGGCAGACTTAAGGCATTGGCCAATGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGGGATTATATGTCAACTTATAAGGAAGACCTTGAAGAGTTAATTGAAGTGGGTGGAGGTACTGTTTTGAGAAGCAAGGAAGAATTGGAAGCGCAAAGACATGAATGCAAAGTGAATTCTCCAAAGTTTCTTGTTGTTTACAACCTTGATCCCCCACAAGGATGCAAGTTAGGGGAAGAAGTATCAATTCTCTGGCAAAGACTCAACGATGCAGAGGATTTAGCTGCCAATACTTTACAAGTGATTGGTCACACATGGATTCTTGAATCAATTGCTGCATGTAAGTTGCAGCCTTTTGTTAACTAA 1986 0.4179 MDDSTKPNAGKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCDSCLADCVTAGAGSECAACNAKYAQTDVRHVPFVENVVAIYKSLEATFCASLFHKHSSGDERVLEPCSAILNSTSSSIQAGKLPLNFPNLNKVGVVKNLKSKIAFHDKAEELELSHGRGKPNPMQSSQMEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPPDRLGNSSLKRACTGNGNLKEKMGQLRSESSASETEGLGRDPKRQKVQPTDAPNDFTPTGSICSFCQSSKTSEATGPMLHYANGNLVTGDAAMKPNVIPVHRVCIDWAPQVYFVDEVVKNLKAELARGAKLKCSKCNLKGAALGCYVKSCRRTYHVTCALDISTCRWDHEDFLLLCPFHSNVKFPCEKSRSKKQAARKHPNLPNLPSHHSNTLEASQDDGKNLIFCGSALTNEEKVLLLNYASKVGATVTKFWTSNVTHVIASTDANGACSRTLKVLMAILNGRWVLKLDWIKACMEEKNPVEEEPYEISVDNQGCQGGPRAGRLKALANEPKLFSGLKFYFSGDYMSTYKEDLEELIEVGGGTVLRSKEELEAQRHECKVNSPKFLVVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFVN 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00036 661 MobiDBLite consensus disorder prediction 184 273 - -
Vium3906g00036 661 SUPERFAMILY BRCT domain 551 659 IPR036420 -
Vium3906g00036 661 SUPERFAMILY RING/U-box 28 93 - -
Vium3906g00036 661 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Vium3906g00036 661 ProSiteProfiles BRCT domain profile. 547 661 IPR001357 -
Vium3906g00036 661 Pfam PHD-like zinc-binding domain 318 396 - -
Vium3906g00036 661 SUPERFAMILY BRCT domain 440 527 IPR036420 -
Vium3906g00036 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 399 IPR013083 -
Vium3906g00036 661 ProSiteProfiles Zinc finger RING-type profile. 31 71 IPR001841 -
Vium3906g00036 661 Pfam BRCA1 C Terminus (BRCT) domain 439 513 IPR001357 -
Vium3906g00036 661 MobiDBLite consensus disorder prediction 251 265 - -
Vium3906g00036 661 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 11 234 IPR031099 GO:0006281|GO:0006974
Vium3906g00036 661 ProSiteProfiles BRCT domain profile. 436 526 IPR001357 -
Vium3906g00036 661 FunFam Breast cancer associated RING 1 274 399 - -
Vium3906g00036 661 SMART ring_2 350 396 IPR001841 -
Vium3906g00036 661 SMART ring_2 31 70 IPR001841 -
Vium3906g00036 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 103 IPR013083 -
Vium3906g00036 661 Pfam BRCT domain, a BRCA1 C-terminus domain 549 658 IPR001357 -
Vium3906g00036 661 Pfam RING-type zinc-finger 31 55 IPR027370 -
Vium3906g00036 661 MobiDBLite consensus disorder prediction 412 431 - -
Vium3906g00036 661 FunFam Breast cancer type 1 susceptibility protein homolog 437 543 - -
Vium3906g00036 661 CDD ePHD 317 396 - -
Vium3906g00036 661 CDD BRCT_Bard1_rpt1 440 519 - -
Vium3906g00036 661 ProSiteProfiles Extended PHD (ePHD) domain profile. 277 397 IPR034732 -
Vium3906g00036 661 Gene3D BRCT domain 437 542 IPR036420 -
Vium3906g00036 661 Gene3D BRCT domain 549 654 IPR036420 -
Vium3906g00036 661 SMART BRCT_7 549 654 IPR001357 -
Vium3906g00036 661 SMART BRCT_7 434 516 IPR001357 -
Vium3906g00036 661 FunFam BRCA1-associated RING domain protein 1 549 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00036 Vium-Chr3906 217068 221810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00036 470 583 Core DNA Replication Machinery Family AT4G02110 28.571 4.80e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00036 K10683 - gmx:100784883 1136.71