Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00035 ATGGACGATTCCACAAAACCTAACGCCGGCAAAACCAAACTTCTCAATCCATGGATGCTTCACTTCCAGAAACTCGCTCTTGAACTCAAGTGTCCTCTCTGTTTGAGTTTATTCAAGAGGCCGGTGTTACTTCCTTGCAACCACCTTTTCTGCGATTCATGCTTAGCTGATTGCGTAACAGCTGGTGCTGGTTCTGAATGTGCTGCTTGTAATGCAAAGTACGCTCAAACAGATGTAAGGCACGTGCCTTTCGTGGAAAATGTGGTAGCAATATATAAAAGCTTGGAGGCCACCTTTTGTGCAAGTGATGAGAGGGTTTTGGAGCCATGCTCGGCAATTCTTAATTCAACTTCTAGCAGTATACAAGCTGGCAAACTTCCTCTGAATTTCCCTAATTTGAACAAGGTTGGGGTTGTCAAGAATCTCAAATCCAAGATTGCATTTCATGATAAAGCTGAAGAGCTTGAGTTGTCTCATGGGAGAGGAAAGCCTAATCCGATGCAATCTTCCCAGATGGAAATGGATGTGAATCAAGTGACACAATCAGCCCCAGATAGCCCTCCTTTTTGTGATACCAAAGGTTCAGATAATGACTGCAGTGATCAAGACAGTGAGCATCCACTACCTCCTGATAGACTGGGAAACTCTTCCTTAAAGAGAGCTTGTACAGGAAATGGAAATTTGAAAGAGAAAATGGGACAACTAAGGTCAGAAAGTTCAGCCTCTGAAACTGAGGGTCTTGGAAGGGATCCCAAGAGACAGAAAGTTCAGCCTACAGATGCTCCAAATGACTTTACTCCAACTGGAAGTATCTGTTCATTTTGCCAATCTTCCAAAACCTCTGAGGCTACTGGACCAATGCTGCATTATGCCAATGGAAACTTAGTTACTGGAGATGCAGCAATGAAGCCAAATGTTATACCTGTGCATAGAGTTTGCATTGACTGGGCACCACAAGTGTACTTTGTTGATGAAGTGGTTAAGAATCTCAAGGCGGAATTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGTTGCTATGTCAAATCATGCAGAAGAACTTATCATGTTACTTGTGCACTTGACATCTCAACATGTCGTTGGGATCATGAGGATTTTCTTTTGCTCTGCCCCTTCCATTCAAACGTCAAATTTCCATGTGAGAAATCAAGATCTAAGAAGCAGGCAGCTCGGAAGCATCCCAATTTGCCTAATTTGCCATCGCACCACTCAAATACTCTTGAAGCTTCACAAGATGATGGTAAAAATTTGATTTTCTGTGGATCCGCGTTAACAAATGAGGAAAAGGTACTTTTGCTCAATTATGCAAGTAAGGTTGGTGCAACTGTGACGAAATTCTGGACATCTAATGTTACACATGTAATAGCATCAACTGATGCTAATGGAGCATGCTCTAGGACATTGAAAGTTCTCATGGCTATTCTAAATGGACGATGGGTACTAAAACTGGATTGGATAAAAGCATGCATGGAAGAGAAAAACCCCGTAGAAGAAGAACCATATGAAATTAGTGTTGACAACCAAGGGTGTCAAGGTGGCCCAAGAGCTGGCAGACTTAAGGCATTGGCCAATGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGGGATTATATGTCAACTTATAAGGAAGACCTTGAAGAGTTAATTGAAGTGGGTGGAGGTACTGTTTTGAGAAGCAAGGAAGAATTGGAAGCGCAAAGACATGAATGCAAAGTGAATTCTCCAAAGTTTCTTGTTGTTTACAACCTTGATCCCCCACAAGGATGCAAGTTAGGGGAAGAAGTATCAATTCTCTGGCAAAGACTCAACGATGCAGAGGATTTAGCTGCCAATACTTTACAAGTGATTGGTCACACATGGATTCTTGAATCAATTGCTGCATGTAAGTTGCAGCCTTTTGTTAACTAA 1962 0.4195 MDDSTKPNAGKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCDSCLADCVTAGAGSECAACNAKYAQTDVRHVPFVENVVAIYKSLEATFCASDERVLEPCSAILNSTSSSIQAGKLPLNFPNLNKVGVVKNLKSKIAFHDKAEELELSHGRGKPNPMQSSQMEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPPDRLGNSSLKRACTGNGNLKEKMGQLRSESSASETEGLGRDPKRQKVQPTDAPNDFTPTGSICSFCQSSKTSEATGPMLHYANGNLVTGDAAMKPNVIPVHRVCIDWAPQVYFVDEVVKNLKAELARGAKLKCSKCNLKGAALGCYVKSCRRTYHVTCALDISTCRWDHEDFLLLCPFHSNVKFPCEKSRSKKQAARKHPNLPNLPSHHSNTLEASQDDGKNLIFCGSALTNEEKVLLLNYASKVGATVTKFWTSNVTHVIASTDANGACSRTLKVLMAILNGRWVLKLDWIKACMEEKNPVEEEPYEISVDNQGCQGGPRAGRLKALANEPKLFSGLKFYFSGDYMSTYKEDLEELIEVGGGTVLRSKEELEAQRHECKVNSPKFLVVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFVN 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00035 653 MobiDBLite consensus disorder prediction 176 265 - -
Vium3906g00035 653 SUPERFAMILY BRCT domain 432 519 IPR036420 -
Vium3906g00035 653 SUPERFAMILY BRCT domain 543 651 IPR036420 -
Vium3906g00035 653 ProSiteProfiles Extended PHD (ePHD) domain profile. 269 389 IPR034732 -
Vium3906g00035 653 SMART ring_2 31 70 IPR001841 -
Vium3906g00035 653 SMART ring_2 342 388 IPR001841 -
Vium3906g00035 653 FunFam Breast cancer type 1 susceptibility protein homolog 429 535 - -
Vium3906g00035 653 SUPERFAMILY RING/U-box 28 93 - -
Vium3906g00035 653 Pfam BRCT domain, a BRCA1 C-terminus domain 541 650 IPR001357 -
Vium3906g00035 653 Pfam RING-type zinc-finger 31 55 IPR027370 -
Vium3906g00035 653 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Vium3906g00035 653 ProSiteProfiles Zinc finger RING-type profile. 31 71 IPR001841 -
Vium3906g00035 653 FunFam BRCA1-associated RING domain protein 1 541 646 - -
Vium3906g00035 653 Gene3D BRCT domain 541 646 IPR036420 -
Vium3906g00035 653 ProSiteProfiles BRCT domain profile. 428 518 IPR001357 -
Vium3906g00035 653 Pfam PHD-like zinc-binding domain 310 388 - -
Vium3906g00035 653 Gene3D BRCT domain 429 534 IPR036420 -
Vium3906g00035 653 MobiDBLite consensus disorder prediction 243 257 - -
Vium3906g00035 653 SMART BRCT_7 426 508 IPR001357 -
Vium3906g00035 653 SMART BRCT_7 541 646 IPR001357 -
Vium3906g00035 653 Pfam BRCA1 C Terminus (BRCT) domain 431 505 IPR001357 -
Vium3906g00035 653 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 391 IPR013083 -
Vium3906g00035 653 MobiDBLite consensus disorder prediction 404 423 - -
Vium3906g00035 653 CDD ePHD 309 388 - -
Vium3906g00035 653 FunFam Breast cancer associated RING 1 266 391 - -
Vium3906g00035 653 CDD BRCT_Bard1_rpt1 432 511 - -
Vium3906g00035 653 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 104 IPR013083 -
Vium3906g00035 653 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 11 226 IPR031099 GO:0006281|GO:0006974
Vium3906g00035 653 ProSiteProfiles BRCT domain profile. 539 653 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00035 Vium-Chr3906 217068 221810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00035 462 575 Core DNA Replication Machinery Family AT4G02110 28.571 4.37e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00035 K10683 - gmx:100784883 1120.15