Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00034 ATGGACGATTCCACAAAACCTAACGCCGGCAAAACCAAACTTCTCAATCCATGGATGCTTCACTTCCAGAAACTCGCTCTTGAACTCAAGTGTCCTCTCTGTTCATGCTTAGCTGATTGCGTAACAGCTGGTGCTGGTTCTGAATGTGCTGCTTGTAATGCAAAGTACGCTCAAACAGATGTAAGGCACGTGCCTTTCGTGGAAAATGTGGTAGCAATATATAAAAGCTTGGAGGCCACCTTTTGTGCAAGTTTGTTTCATAAACATTCTTCTGGTGATGAGAGGGTTTTGGAGCCATGCTCGGCAATTCTTAATTCAACTTCTAGCAGTATACAAGCTGGCAAACTTCCTCTGAATTTCCCTAATTTGAACAAGGTTGGGGTTGTCAAGAATCTCAAATCCAAGATTGCATTTCATGATAAAGCTGAAGAGCTTGAGTTGTCTCATGGGAGAGGAAAGCCTAATCCGATGCAATCTTCCCAGATGGAAATGGATGTGAATCAAGTGACACAATCAGCCCCAGATAGCCCTCCTTTTTGTGATACCAAAGGTTCAGATAATGACTGCAGTGATCAAGACAGTGAGCATCCACTACCTCCTGATAGACTGGGAAACTCTTCCTTAAAGAGAGCTTGTACAGGAAATGGAAATTTGAAAGAGAAAATGGGACAACTAAGGTCAGAAAGTTCAGCCTCTGAAACTGAGGGTCTTGGAAGGGATCCCAAGAGACAGAAAGTTCAGCCTACAGATGCTCCAAATGACTTTACTCCAACTGGAAGTATCTGTTCATTTTGCCAATCTTCCAAAACCTCTGAGGCTACTGGACCAATGCTGCATTATGCCAATGGAAACTTAGTTACTGGAGATGCAGCAATGAAGCCAAATGTTATACCTGTGCATAGAGTTTGCATTGACTGGGCACCACAAGTGTACTTTGTTGATGAAGTGGTTAAGAATCTCAAGGCGGAATTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGTTGCTATGTCAAATCATGCAGAAGAACTTATCATGTTACTTGTGCACTTGACATCTCAACATGTCGTTGGGATCATGAGGATTTTCTTTTGCTCTGCCCCTTCCATTCAAACGTCAAATTTCCATGTGAGAAATCAAGATCTAAGAAGCAGGCAGCTCGGAAGCATCCCAATTTGCCTAATTTGCCATCGCACCACTCAAATACTCTTGAAGCTTCACAAGATGATGGTAAAAATTTGATTTTCTGTGGATCCGCGTTAACAAATGAGGAAAAGGTACTTTTGCTCAATTATGCAAGTAAGGTTGGTGCAACTGTGACGAAATTCTGGACATCTAATGTTACACATGTAATAGCATCAACTGATGCTAATGGAGCATGCTCTAGGACATTGAAAGTTCTCATGGCTATTCTAAATGGACGATGGGTACTAAAACTGGATTGGATAAAAGCATGCATGGAAGAGAAAAACCCCGTAGAAGAAGAACCATATGAAATTAGTGTTGACAACCAAGGGTGTCAAGGTGGCCCAAGAGCTGGCAGACTTAAGGCATTGGCCAATGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGGGATTATATGTCAACTTATAAGGAAGACCTTGAAGAGTTAATTGAAGTGGGTGGAGGTACTGTTTTGAGAAGCAAGGAAGAATTGGAAGCGCAAAGACATGAATGCAAAGTGAATTCTCCAAAGTTTCTTGTTGTTTACAACCTTGATCCCCCACAAGGATGCAAGTTAGGGGAAGAAGTATCAATTCTCTGGCAAAGACTCAACGATGCAGAGGATTTAGCTGCCAATACTTTACAAGTGATTGGTCACACATGGATTCTTGAATCAATTGCTGCATGTAAGTTGCAGCCTTTTGTTAACTAA 1932 0.4172 MDDSTKPNAGKTKLLNPWMLHFQKLALELKCPLCSCLADCVTAGAGSECAACNAKYAQTDVRHVPFVENVVAIYKSLEATFCASLFHKHSSGDERVLEPCSAILNSTSSSIQAGKLPLNFPNLNKVGVVKNLKSKIAFHDKAEELELSHGRGKPNPMQSSQMEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPPDRLGNSSLKRACTGNGNLKEKMGQLRSESSASETEGLGRDPKRQKVQPTDAPNDFTPTGSICSFCQSSKTSEATGPMLHYANGNLVTGDAAMKPNVIPVHRVCIDWAPQVYFVDEVVKNLKAELARGAKLKCSKCNLKGAALGCYVKSCRRTYHVTCALDISTCRWDHEDFLLLCPFHSNVKFPCEKSRSKKQAARKHPNLPNLPSHHSNTLEASQDDGKNLIFCGSALTNEEKVLLLNYASKVGATVTKFWTSNVTHVIASTDANGACSRTLKVLMAILNGRWVLKLDWIKACMEEKNPVEEEPYEISVDNQGCQGGPRAGRLKALANEPKLFSGLKFYFSGDYMSTYKEDLEELIEVGGGTVLRSKEELEAQRHECKVNSPKFLVVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFVN 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00034 643 CDD BRCT_Bard1_rpt1 422 501 - -
Vium3906g00034 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 381 IPR013083 -
Vium3906g00034 643 CDD ePHD 299 378 - -
Vium3906g00034 643 FunFam Breast cancer associated RING 1 256 381 - -
Vium3906g00034 643 Pfam BRCA1 C Terminus (BRCT) domain 421 495 IPR001357 -
Vium3906g00034 643 Gene3D BRCT domain 419 524 IPR036420 -
Vium3906g00034 643 MobiDBLite consensus disorder prediction 233 247 - -
Vium3906g00034 643 SUPERFAMILY BRCT domain 422 509 IPR036420 -
Vium3906g00034 643 MobiDBLite consensus disorder prediction 166 255 - -
Vium3906g00034 643 ProSiteProfiles BRCT domain profile. 529 643 IPR001357 -
Vium3906g00034 643 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 146 641 IPR031099 GO:0006281|GO:0006974
Vium3906g00034 643 Gene3D BRCT domain 531 636 IPR036420 -
Vium3906g00034 643 Pfam BRCT domain, a BRCA1 C-terminus domain 531 640 IPR001357 -
Vium3906g00034 643 SUPERFAMILY BRCT domain 533 641 IPR036420 -
Vium3906g00034 643 ProSiteProfiles BRCT domain profile. 418 508 IPR001357 -
Vium3906g00034 643 MobiDBLite consensus disorder prediction 394 413 - -
Vium3906g00034 643 SMART BRCT_7 531 636 IPR001357 -
Vium3906g00034 643 SMART BRCT_7 416 498 IPR001357 -
Vium3906g00034 643 ProSiteProfiles Extended PHD (ePHD) domain profile. 259 379 IPR034732 -
Vium3906g00034 643 FunFam BRCA1-associated RING domain protein 1 531 636 - -
Vium3906g00034 643 FunFam Breast cancer type 1 susceptibility protein homolog 419 525 - -
Vium3906g00034 643 Pfam PHD-like zinc-binding domain 300 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00034 Vium-Chr3906 217068 221810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00034 452 565 Core DNA Replication Machinery Family AT4G02110 28.571 4.03e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00034 K10683 - gmx:100784883 1088.17