Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00030 ATGCTAGACATGACTAATTTTCAAAGGCTTCACACTCTAGTCCTTCCAATTATCTTCCTGTGTTTGTTTCCTTTGAGAATCGCTTCATCACCAACAGCAGAAGCAGAATCACTTGTCAAATGGAAAAACAGTCTAACACCTCCTCTTCCTCCTTCTCTAAACTCATGGTCCCTCACCAACCTAACCAACCTTTGCTTTTGGGATGCCGTTGTTTGTGACAATACCAGCACAACAGTCTTAGAGATAAACTTGTCTGGTGCCAATATCACTGGGACTATCACTGTCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTCAATGCCAACAACTTTGAGGGGTCAATACCACCAGCAATTGGTAACCTCTCCAAGCTCACACTTTTGGACTTGGGGAACAACTTATTTGAAGACTCACTGCCTAAAGAACTAGGCCAGCTACGAGAGCTTCGATATCTCAGCCTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTACCTAAGGTATGGTACATGGACCTTGGATCAAATTATTTTATAACTCCTCTTCACTGGTCCCAATATTCATGCATGCCTTCCTTGACACGCCTTGCTTTACATCTAAATCCATCACTCACTGGTGAATTCCCGAGTTTCTTACTTGAGTGCCATAACTTGACATATCTTGACATCTCTCAGAATGGATGGAATGTTACTATTCCAGAATCTTTGTATAGCAATTTGGGCAAGCTAGAATTCCTCAACCTCACCAACAATGGGTTTGGAGGAAAGCTGTCTCCCAACTTGTCCTTGCTTTCTAATCTCAAAGAACTTCGTATTGGTAATAACTTTTTTACTGGTCCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAAATTCTTGAACTGAATAACATTTCTGCCCATGGAAAGATCCCTTCTTCCTTAGGCCAACTTAGGGAGCTGTGGCATCTTGATCTCAGTATAAATTCTTTTAACTCTACAGTTCCTTCGGAGCTTGGCCTGTGCAGAAATCTATCCTTCTTGAGTTTAGCGGTGAATCATTTGACTGGTCCTTTGCCTATGTCATTAGCTAATCTGACTAAAATATCAGAACTGGGATTATCAGATAATTCCTTTTCTGGTGAACTTTCTGCTACGCTCCTCTCTAATTGGACCCAGCTTACCTCCTTGCAAGTCCAAAACAATAATTTTACCGGAAAGATTCCTCCGGAGATTGGCCTGTTGAAAAGAATTAACTACCTCTTTCTGTACAATAATACTTTCTCTGGTTCCATTCCTGTAGATATTGGAAACCTGAAGGAAATGGTAAAGTTAGACCTTTCACAAAACCAATTCTCTGGTCTGATTCCATCAACACTTTGGGATTTGACAAACGTTCAAGTCATGAATCTTTTCTTCAATGAACTCTCTGGAATCATTCACGCGGATATTGGAAATTTGACCTCTCTTGAAATCTTTGATGTCAACAGCAATAACTTGCATGGGGAGTTGCCAGCAACCATTGCTCAACTAACTGCTTTAAAAAGTTTTTCAGTGTTCAGCAATAACTTCAGTGGCAGAATTCCCAGAGAATTTGGAAAGGGAAATCCTTCTTTGACTGATGTCTACCTTTCAAACAACAGCTTTTATGGAGAACTGCCAATTGACTTGTGCAGTGGTGGCCAGCTAACTGTTTTGGCTGTCAATAACAACAGCTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTTCACCACTAGTTAGAGTTCGGCTTGATAATAACCAGCTCACTGGAAACATCACAGACGCATTTGGGGTTCTCCCAAATCTCGTTTTGATATCACTTAGTACAAACCTACTGGTTGGTGAGCTCTCCCCAGAGTGGGGCGGGTGCGCCAACTTAACCAGTATGGATATGGGAAACAACAAACTTTCTGGAAAAATTCCTTCTGCGCTAAGTAAGCTGAGTCAATTAGGGTATCTAAACCTTCATTCCAATGAATTCACTGGTAGTATCCCACCTGAAATCGGAAATCTAAGCCGGCTTTTCAGATTGAATTTGAGCAGTAACCATTTATCAGGAGAAATCCCAAAGAGTTATGGGAGATTGGCTAAGTTAAATTTTCTTGATTTATCAAATAACAACTTCGGCGGTAGCATTCCTAAAGAAATTGGTGATTGTGATGGCTTACTGAGCCTGAATTTAAGCCATAACAGTCTATCTGGGGAGATACCAGATGAACTTGGCAATCTGTTCTCGCTGCAAATCATGTTGGACATCAGCAGCAACTCTCTTTCCGGGGCTCTTCCCCAAAACCTTGAAAAGTTAAGAGCATTGGAGATTCTCAATGTGTCACACAACCAACTATCAGGGACAATCCCACGATCATTTTCAAGCATGCTCAGCCTTCAATCTGTTGATTTTTCTTACAACAAACTGAGTGGTTCAATCCCCACAGGCCGTGTTTTCGAGACAGCGACTGCTGAAGCCTATGCTGGAAACTCAGGTTTGTGTGGTGAGATAGAAGGATTAACTTGCCCCAAATCACTTTCCACGGACAAATCTGGAGGAGTTAACAAAAAGGTTCTTCTTGGGGTTATCATTCCAGTTTGTGTATTAATTGGGTTAATTAGTGTTGGAGCAATACTTCGCCGGCGGCATATCATAAAACACGGTGATGAAGAGTCCAAAAGCAATGAAAAAAGTGATCAGCCTATCAGCGTGGTGTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCAATGACTTCAATGACAAGTACTGCATCGGAAAAGGAGGATTCGGAAGTGTTTATAGAGCACAGTTGCTCACAGGTCAGGTCGTTGCTGTGAAGAGGCTCAACATATCAGACTCCGATGAAATTCCACCAATGAATCGCCTGAGCTTTTTGAATGAGATAGAAGCACTTACAGGAGTGAGACACCGCAATATAATAAAGCTTTATGGGTTCTGTTCTTGCAGGGGACAAATGTTCTTGGTTTACGAATATATAGACAGAGGAAGTTTGGCAAAAGTGTTGTACGGAGAGGAAGGACAATTGGAGCTAAGGTGGGCCAAAAGGCTAAAAATTGTGCAAGGAATAGCACATGCAATTTCATACCTGCACACAGATTGTTCCCCACAAATCGTGCACCGGGATGTAACACTGAATAACATACTACTAGACTCCGATTTAGAACCTCGTCTTGCAGATTTTGGCACAGCAAAGCTACTAAGCTCAGACACTTCAACGTGGACCTCAGTTGCTGGATCCTATGGTTACATGGCTCCAGAACTAGCACAAACAATGAGAGTGACGGAGAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGATGGAGATATTGATGGGAAAGCATCCTGGAGAACTGTTGGGTACACTGTCTTCAAACAAGTATTTGTCATCAACTGAGGAAGCACAGGTGCTACTGACGGACGTGCTTGATCAAAGGCTTCCACCTCCTACAGGCCAATTGGCAGAAGCAGTGGTGTTCACAATGACCATAGCTTTGGCATGCATACGTGAGTCTCCAGAGTCCAGACCCATCATGCGTGCTGTGGCTCAAGAACTATCGGCTACTACTCAGCCTTATCTTTCCCAGCCACTTAGCTTGATAACCATGAACAAGCTTAGAGGCTTCCAGAAATAG 3693 0.4257 MLDMTNFQRLHTLVLPIIFLCLFPLRIASSPTAEAESLVKWKNSLTPPLPPSLNSWSLTNLTNLCFWDAVVCDNTSTTVLEINLSGANITGTITVLDFASLPNLTQLNLNANNFEGSIPPAIGNLSKLTLLDLGNNLFEDSLPKELGQLRELRYLSLYNNNLNGTIPYQLMNLPKVWYMDLGSNYFITPLHWSQYSCMPSLTRLALHLNPSLTGEFPSFLLECHNLTYLDISQNGWNVTIPESLYSNLGKLEFLNLTNNGFGGKLSPNLSLLSNLKELRIGNNFFTGPVPTEIGLISGLQILELNNISAHGKIPSSLGQLRELWHLDLSINSFNSTVPSELGLCRNLSFLSLAVNHLTGPLPMSLANLTKISELGLSDNSFSGELSATLLSNWTQLTSLQVQNNNFTGKIPPEIGLLKRINYLFLYNNTFSGSIPVDIGNLKEMVKLDLSQNQFSGLIPSTLWDLTNVQVMNLFFNELSGIIHADIGNLTSLEIFDVNSNNLHGELPATIAQLTALKSFSVFSNNFSGRIPREFGKGNPSLTDVYLSNNSFYGELPIDLCSGGQLTVLAVNNNSFSGPLPKSLRNCSPLVRVRLDNNQLTGNITDAFGVLPNLVLISLSTNLLVGELSPEWGGCANLTSMDMGNNKLSGKIPSALSKLSQLGYLNLHSNEFTGSIPPEIGNLSRLFRLNLSSNHLSGEIPKSYGRLAKLNFLDLSNNNFGGSIPKEIGDCDGLLSLNLSHNSLSGEIPDELGNLFSLQIMLDISSNSLSGALPQNLEKLRALEILNVSHNQLSGTIPRSFSSMLSLQSVDFSYNKLSGSIPTGRVFETATAEAYAGNSGLCGEIEGLTCPKSLSTDKSGGVNKKVLLGVIIPVCVLIGLISVGAILRRRHIIKHGDEESKSNEKSDQPISVVWGRDGKFTFSDLVKATNDFNDKYCIGKGGFGSVYRAQLLTGQVVAVKRLNISDSDEIPPMNRLSFLNEIEALTGVRHRNIIKLYGFCSCRGQMFLVYEYIDRGSLAKVLYGEEGQLELRWAKRLKIVQGIAHAISYLHTDCSPQIVHRDVTLNNILLDSDLEPRLADFGTAKLLSSDTSTWTSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVVMEILMGKHPGELLGTLSSNKYLSSTEEAQVLLTDVLDQRLPPPTGQLAEAVVFTMTIALACIRESPESRPIMRAVAQELSATTQPYLSQPLSLITMNKLRGFQK 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00030 1230 FunFam MDIS1-interacting receptor like kinase 2 1012 1211 - -
Vium3906g00030 1230 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 437 534 - -
Vium3906g00030 1230 Gene3D Ribonuclease Inhibitor 537 857 IPR032675 -
Vium3906g00030 1230 Gene3D Ribonuclease Inhibitor 31 191 IPR032675 -
Vium3906g00030 1230 Pfam Protein kinase domain 933 1159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3906g00030 1230 SUPERFAMILY RNI-like 64 314 - -
Vium3906g00030 1230 Gene3D Transferase(Phosphotransferase) domain 1 1012 1215 - -
Vium3906g00030 1230 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 756 1199 - -
Vium3906g00030 1230 ProSitePatterns Protein kinases ATP-binding region signature. 937 959 IPR017441 GO:0005524
Vium3906g00030 1230 ProSiteProfiles Protein kinase domain profile. 931 1213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3906g00030 1230 FunFam MDIS1-interacting receptor like kinase 2 31 192 - -
Vium3906g00030 1230 SUPERFAMILY L domain-like 245 553 - -
Vium3906g00030 1230 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1057 1069 IPR008266 GO:0004672|GO:0006468
Vium3906g00030 1230 Coils Coil 1229 1230 - -
Vium3906g00030 1230 SMART LRR_typ_2 248 272 IPR003591 -
Vium3906g00030 1230 SMART LRR_typ_2 779 802 IPR003591 -
Vium3906g00030 1230 SMART LRR_typ_2 489 513 IPR003591 -
Vium3906g00030 1230 SMART LRR_typ_2 320 344 IPR003591 -
Vium3906g00030 1230 SMART LRR_typ_2 658 682 IPR003591 -
Vium3906g00030 1230 SMART LRR_typ_2 706 730 IPR003591 -
Vium3906g00030 1230 SMART LRR_typ_2 441 464 IPR003591 -
Vium3906g00030 1230 SMART LRR_typ_2 610 634 IPR003591 -
Vium3906g00030 1230 SMART LRR_typ_2 101 124 IPR003591 -
Vium3906g00030 1230 SMART LRR_typ_2 125 149 IPR003591 -
Vium3906g00030 1230 Gene3D Ribonuclease Inhibitor 192 536 IPR032675 -
Vium3906g00030 1230 FunFam Leucine-rich repeat receptor protein kinase MSP1 894 1011 - -
Vium3906g00030 1230 SUPERFAMILY Protein kinase-like (PK-like) 907 1205 IPR011009 -
Vium3906g00030 1230 SUPERFAMILY RNI-like 496 820 - -
Vium3906g00030 1230 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 538 853 - -
Vium3906g00030 1230 FunFam MDIS1-interacting receptor like kinase 2 196 390 - -
Vium3906g00030 1230 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Vium3906g00030 1230 CDD STKc_IRAK 937 1205 - -
Vium3906g00030 1230 Pfam Leucine rich repeat 761 816 IPR001611 GO:0005515
Vium3906g00030 1230 Pfam Leucine rich repeat 102 162 IPR001611 GO:0005515
Vium3906g00030 1230 Gene3D Phosphorylase Kinase; domain 1 892 1011 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00030 Vium-Chr3906 196728 200895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00030 13 652 Receptor kinase-like Gene Family AT4G08850 32.558 3.38e-79 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium3906g00030 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00030 - - pvu:PHAVU_001G163700g 1992.62