Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00029 ATGACAACTTTCCAAAAGGTTCATGCTTTAGCCTTTCATATACTCTTGCTAGCTTTGCTTCCATTGAAAATCGCTTCATCACTAACAACAGAAGCAGAAGCCCTTGTCAAATGGAAAAACAGTTTATCCTCTCCTCTTCCTCCTTCTCAAGACTCATGGTCCCTCACCAACCTTTCCAACCTTTGCATTTGGGATGCCATTGTTTGTGACAATACCAACACAACAGTCTCAGAGATAAACTTGTCTGGTGCTAATCTCACTGGGACTCTCTCTGCCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTCAATGCCAACAACTTTGGGGGGTCAATACCATCAGAAATTGGCAAACTCTCCAAGCTCACACTATTGGACTTGGGGAACAACTTATTTGAAGACTCGCTGCCTAAAGAACTAGGCCAGCTAAGGGAGCTTCGATATCTCAGCCTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTACCTAAGGTATGGTACATGAACCTCGGATCAAATTATTTCATAACTCCTCTTCACTGGTCCCAATATTCATGCATGCCTTCCTTGACACGCCTTGCTTTACATCTAAATCCAACACTCACTGGTGAATTCCCGAGTTTCATACTTGAGTGCCATAACTTGACATACCTTGACATCTCTCAGAATGGATGGAATGACACTATTCCAGAATCTCTGTATAGCAATTTGGGCAAGCTAGAATACCTCAACCTCACCAACAACGGGTTTGGAGGAAAGCTGTCACCCAACTTGTCCATGCTTTCTAATCTCAAAGAACTTCGTATTGGTTATAACTTGTTTACTGGTCCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAAATTCTTGAACTGAATAACATTTCTGCCCATGGAAAGATCCCTTCTTCCTTAGGCCAACTTAGGGAGCTGTGGCATCTTGATCTCAGTATAAATTCTTTTAACTCTACAGTCCCTTCGGAGCTTGGCCTGTGCAGAAATCTATCATTCTTGAGATTAGCAGTGAATAATTTGACTGGTCCTTTGCCTATGTCATTAGCTAATCTGACTAAAATATCAGAACTGGGATTATCAGATAACTCCTTTTCTGGTGAACTTTCTGCTACGCTTTTCTCTAACTGGACCCAGTTGATCTCCTTGCAAATCCAAAACAATAACTTTACAGGAAAGCTTCCTCCACATATTGGCCTGTTGAAAAAACTTAACTTTCTCTACCTGCACAATAATCACTTCTCTGGTCCCATTCCTGTGGAGATTGGAAACCTGAAGGAAATGACATGGTTAGACCTTTCACAAAACCAATTCTCTGGCCCAATTCCATCAACTCTTTGGAATCTGACTAACATTCAACTCATGAATCTTTACTCCAATGAGCTCTCTGGAACCATCCCCATGGATATTGGAAACTTGACCTCACTCCAAATCTTTGATGTCAGCAACAATAAATTGTATGGGGAGTTGCCAGCAACCATTGCTCAACTAACTGCTTTAAGTAAATTTTCCGTGTTCAGCAATAACTTCACTGGCAGCCTTCCTAGACAATTTGGAAAGATTAATCCTTCTTTGACCTACGTCTACCTTTCAAACAACAGTTTCTCAGGAGAACTGCCACCTGACATATGCAGTGGGGGCAAACTAATTATTTTTGCAATCAATAACAACAACTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTCCATCACTTATTAGAGTTCGGCTTGATGATAACCAGCTCACTGGAAACATCACAGACGCATTTGGGGTTCTCCCAAATCTTGTTTTTATCTCACTTAATACAAACCAACTAGTGGGTGAGCTATCTCCCGAGTGGGGCGAGTGTGCCAGCTTAACCAATATGAATATGGGAAGCAACAAACTTTCTGGAAAAATTCCTTCTGCGCTAAGTAAGTTGAGTCAATTAAGGTATCTAAGCCTTCATTCCAATGAATTCACTGGTAGTATCCCACCCGAAATCGGAAATCTAAGCCTGCTTTACTCGTTCAATTTGAGCAGTAACCATTTATCCGGAGAAATCCCAAAGAGTTATGGGAGATTGGCTAAGCTAAATTTTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAAAGAAATCGGTGATTGTGATGGCTTACTGAGCCTGAATTTAAGCCATAACAGTCTATCTGGGGAGATACCAGATGAACTTGGCAATCTGTTCTCACTGCAAATCATGTTGGACATCAGCAGCAACTCTCTTTCCGGGGCTCTTCCCCAAAACCTTGAAAAGTTAACAGCATTGGAAATTCTCAATGTGTCACACAACCATCTATCAGGGACAATCCCACGATCATTTTCAAGCATGCTCAGCCTTCAATATATTGATTTTTCTTACAACAAGCTGAGTGGTTCAATCCCCACAGGCCGTGTTTTCCAGACAGCAAATGCTGAAGCCTACGCGGGAAACTCAGGTTTGTGTGGTGAGATAAAAGGATTAACATGCCCCAAATCACTTTCCCCGGACAAATCTGGAGGAGTTAACAAAAAGGTTCTTCTTGGGTTTATCATACCAGTTTGTGTATTAATTGGGATGATTAGTGTTGGAGCAATACTACGCCGGCGGCATATCATAAATAACCTTGATGAAGTGTCCAAAAGCAATGAAAAAAGTGATCAGCCTATCAGCGTGGTGTGTGGAAGAGATGGAAAATTCTCATTTTCTGATCTTGTTAAGGCCACCGATGACTTCAATGACAAGTACTGCGTTGGAAAAGGAGGATTCGGAAGTGTTTATAGAGCACAATTACCCACAGGTCAAGTCGTTGCTGTGAAGAGGCTCAACATATCATACTCCGATGACATTCAACCAATGAACCGCCATAGCTTTTTGAATGAGATAGAAGCACTTACAGGTGTGAGACACCGCAATATAATAAAGCTTTATGGATTCTGTTCTTGCAGGGGACAAATGTTCTTGGTTTATGAATACATAGACAGAGGAAGTTTGGAAAAAGTGTTGTACGGAGAGGAAGGAAAATTGGAGCTAAGCTGGGCCACAAGGATAAAAATTGTACAAGGAATAGCACATGCAATTTCATACCTGCACACAGATTGCTCCCCACAAATTGTGCACCGGGATGTAACACTGAATAACATACTACTAGACTTCGACTTTGAACCCCGTCTTGCAGATTTTGGCACAGCAAAGCTCCTAAGCTCAGACGCTTCAAAGTGGACCTCAGTTGCTGGATCCTATGGTTACATGGCTCCAGAACTGGCACAAACAATGAGAGTGACGGAGAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGATGGAGATATTGATGGGAAAGCATCCTGGAGAACTGTTGGGTACACTGTCTTCAAACAAGTATTTGTCATCAACAGAGGAAGCACAGGTGCTACTGAAGGACGTGCTTGATCAAAGGCTTCCACCTCCTACAGGCCAATTGGCAGAAGCAGTGGTGTTCACAATGACCATAGCTTTGGCATGCATACGTGAGTCTCCAGAGTCCAGACCCATCATGCGTGCTGTGGCTCAAGAACTATCGGCTACTACTCAGCCTTATCTTTCCCAGCCATTTACCATGATTACCATGAACAAGCTTAGAGGCTTCCAGAAGTAG 3684 0.424 MTTFQKVHALAFHILLLALLPLKIASSLTTEAEALVKWKNSLSSPLPPSQDSWSLTNLSNLCIWDAIVCDNTNTTVSEINLSGANLTGTLSALDFASLPNLTQLNLNANNFGGSIPSEIGKLSKLTLLDLGNNLFEDSLPKELGQLRELRYLSLYNNNLNGTIPYQLMNLPKVWYMNLGSNYFITPLHWSQYSCMPSLTRLALHLNPTLTGEFPSFILECHNLTYLDISQNGWNDTIPESLYSNLGKLEYLNLTNNGFGGKLSPNLSMLSNLKELRIGYNLFTGPVPTEIGLISGLQILELNNISAHGKIPSSLGQLRELWHLDLSINSFNSTVPSELGLCRNLSFLRLAVNNLTGPLPMSLANLTKISELGLSDNSFSGELSATLFSNWTQLISLQIQNNNFTGKLPPHIGLLKKLNFLYLHNNHFSGPIPVEIGNLKEMTWLDLSQNQFSGPIPSTLWNLTNIQLMNLYSNELSGTIPMDIGNLTSLQIFDVSNNKLYGELPATIAQLTALSKFSVFSNNFTGSLPRQFGKINPSLTYVYLSNNSFSGELPPDICSGGKLIIFAINNNNFSGPLPKSLRNCPSLIRVRLDDNQLTGNITDAFGVLPNLVFISLNTNQLVGELSPEWGECASLTNMNMGSNKLSGKIPSALSKLSQLRYLSLHSNEFTGSIPPEIGNLSLLYSFNLSSNHLSGEIPKSYGRLAKLNFLDLSNNNFSGSIPKEIGDCDGLLSLNLSHNSLSGEIPDELGNLFSLQIMLDISSNSLSGALPQNLEKLTALEILNVSHNHLSGTIPRSFSSMLSLQYIDFSYNKLSGSIPTGRVFQTANAEAYAGNSGLCGEIKGLTCPKSLSPDKSGGVNKKVLLGFIIPVCVLIGMISVGAILRRRHIINNLDEVSKSNEKSDQPISVVCGRDGKFSFSDLVKATDDFNDKYCVGKGGFGSVYRAQLPTGQVVAVKRLNISYSDDIQPMNRHSFLNEIEALTGVRHRNIIKLYGFCSCRGQMFLVYEYIDRGSLEKVLYGEEGKLELSWATRIKIVQGIAHAISYLHTDCSPQIVHRDVTLNNILLDFDFEPRLADFGTAKLLSSDASKWTSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVVMEILMGKHPGELLGTLSSNKYLSSTEEAQVLLKDVLDQRLPPPTGQLAEAVVFTMTIALACIRESPESRPIMRAVAQELSATTQPYLSQPFTMITMNKLRGFQK 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00029 1227 ProSiteProfiles Protein kinase domain profile. 928 1210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3906g00029 1227 FunFam MDIS1-interacting receptor like kinase 2 1009 1208 - -
Vium3906g00029 1227 SUPERFAMILY RNI-like 285 620 - -
Vium3906g00029 1227 Pfam Leucine Rich Repeat 247 267 IPR001611 GO:0005515
Vium3906g00029 1227 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1054 1066 IPR008266 GO:0004672|GO:0006468
Vium3906g00029 1227 Gene3D Ribonuclease Inhibitor 189 287 IPR032675 -
Vium3906g00029 1227 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 437 531 - -
Vium3906g00029 1227 Pfam Leucine rich repeat 758 813 IPR001611 GO:0005515
Vium3906g00029 1227 Gene3D Ribonuclease Inhibitor 388 508 IPR032675 -
Vium3906g00029 1227 Gene3D Phosphorylase Kinase; domain 1 889 1008 - -
Vium3906g00029 1227 ProSitePatterns Protein kinases ATP-binding region signature. 934 956 IPR017441 GO:0005524
Vium3906g00029 1227 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 535 850 - -
Vium3906g00029 1227 PANTHER LEUCINE RICH REPEAT KINASE 2 483 1206 - -
Vium3906g00029 1227 FunFam MDIS1-interacting receptor like kinase 2 193 389 - -
Vium3906g00029 1227 SUPERFAMILY Protein kinase-like (PK-like) 907 1202 IPR011009 -
Vium3906g00029 1227 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Vium3906g00029 1227 Gene3D Ribonuclease Inhibitor 288 387 IPR032675 -
Vium3906g00029 1227 FunFam MDIS1-interacting receptor like kinase 2 28 189 - -
Vium3906g00029 1227 Gene3D Ribonuclease Inhibitor 513 848 IPR032675 -
Vium3906g00029 1227 SUPERFAMILY L domain-like 52 380 - -
Vium3906g00029 1227 FunFam Leucine-rich repeat receptor protein kinase MSP1 891 1008 - -
Vium3906g00029 1227 SUPERFAMILY L domain-like 536 827 - -
Vium3906g00029 1227 SMART LRR_typ_2 486 510 IPR003591 -
Vium3906g00029 1227 SMART LRR_typ_2 317 341 IPR003591 -
Vium3906g00029 1227 SMART LRR_typ_2 536 559 IPR003591 -
Vium3906g00029 1227 SMART LRR_typ_2 414 438 IPR003591 -
Vium3906g00029 1227 SMART LRR_typ_2 245 269 IPR003591 -
Vium3906g00029 1227 SMART LRR_typ_2 776 799 IPR003591 -
Vium3906g00029 1227 SMART LRR_typ_2 703 727 IPR003591 -
Vium3906g00029 1227 SMART LRR_typ_2 607 631 IPR003591 -
Vium3906g00029 1227 SMART LRR_typ_2 365 389 IPR003591 -
Vium3906g00029 1227 SMART LRR_typ_2 122 146 IPR003591 -
Vium3906g00029 1227 SMART LRR_typ_2 98 121 IPR003591 -
Vium3906g00029 1227 SMART LRR_typ_2 655 679 IPR003591 -
Vium3906g00029 1227 CDD STKc_IRAK 934 1202 - -
Vium3906g00029 1227 Gene3D Transferase(Phosphotransferase) domain 1 1009 1213 - -
Vium3906g00029 1227 Pfam Protein kinase domain 931 1196 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00029 Vium-Chr3906 187515 191826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00029 1 649 Receptor kinase-like Gene Family AT4G08850 31.902 1.98e-83 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium3906g00029 Pkinase 8.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00029 - - pvu:PHAVU_001G163700g 1998.02