Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00028 ATGGAAGCACGTTCTACTTTCTCTATTGAAAGATCAAATGCTAAGCAACACAATAACATGGGGATGTCTGAAGCATTTCCTTCATCGTTGCCTGTCCTTTCAATGCCTCTAGAAGGGACATGCCCCAAATTATCTGATTCTCAGCCAGCATTTATGGAAAAAGCGCTTAAACCAAAACCTTTTACTCATTCAAATCATTTAACTACCAGCGGAGCTGTTGGGCATATGTTTTCATCTTCTCCTGGATATTCAACTGATCTTCATCACTCATCCTTTTCATCTCATGAAAAGCACCCTATAAATACTCCTTTTATTTCACAGTCATTGAGTAACAAGGCTTCACTGCCATTATCTTATTCTTCAAATAGTGAACCATTACCTTCTACAACATCAACACTTTATTCCAATGGAAACAGTGTTTCCTGGCTTACAGATTCCCTATCTGGCTTTCTTGATTTCCCTGCCAATACCTCAATTGATAATAGTCAAGCAGAAAGCAATGCCTGCAATATTATGGCAAATGAAGAGTATTCTACTAAGCGAAGTGATTGGCAGGAGTGGGCTAACCAGTTAATCGGTGATGATGATCCCTTGACTGCTAATTGGAATGATCTTCTTGCTGACAACATTCAAGATCTTGAACCGAAGGCCTCAAATTCATCTTCACAGCTTCCCATAGGACACCAATCCCAAAGCCATCAACAACTTAGTGTTTCATCTGGAGAAAATCGTGTTGGTGTTGCCCCATCTTCGTCAGCAAATTCAGTACCTTCCAAGCCACGAATGCGCTGGACACCTGAACTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACACCTAAAGGTGTGCTGAAGCTTATGAAAGTTGAAGGACTAACTATATACCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGGCCTGAGTCATCTGAAGGAGCTGCCGAGAAAAAACTAAGTCCAATTGAAGAGATATCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGCTGCGAATAGAAGAACAAGGAAGGTACCTTCAAATGATGTTTGAGAAACAGTGCAAATCTGGCATTGAAACATTTAAGGCATCATCTGCCGGTGATAGTCCATCTGGAGTTTCTTCTGATGTCATGAAAGATTCTACAGCCAAAACTGATTCCGAAACTGTCAAAGTGGATCTTTGCGAGTCAGGACCTGATCAAGCAAATGGCAGTACCAAAGTTGAGGAAAGCTCATCGAAAGTGGATGAGAAGCAGGATCCTGCTGAATGTAAAGCATCTGAGAATCCTAAGCAACATGCTAGTGTAGATAGTTCTCAAGCCCCAAAGCGTCAAAGGACTGAGGATTAA 1455 0.4151 MEARSTFSIERSNAKQHNNMGMSEAFPSSLPVLSMPLEGTCPKLSDSQPAFMEKALKPKPFTHSNHLTTSGAVGHMFSSSPGYSTDLHHSSFSSHEKHPINTPFISQSLSNKASLPLSYSSNSEPLPSTTSTLYSNGNSVSWLTDSLSGFLDFPANTSIDNSQAESNACNIMANEEYSTKRSDWQEWANQLIGDDDPLTANWNDLLADNIQDLEPKASNSSSQLPIGHQSQSHQQLSVSSGENRVGVAPSSSANSVPSKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIETFKASSAGDSPSGVSSDVMKDSTAKTDSETVKVDLCESGPDQANGSTKVEESSSKVDEKQDPAECKASENPKQHASVDSSQAPKRQRTED 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00028 484 Coils Coil 347 367 - -
Vium3906g00028 484 SUPERFAMILY Homeodomain-like 257 313 IPR009057 -
Vium3906g00028 484 NCBIfam myb-like DNA-binding domain, SHAQKYF class 259 313 IPR006447 GO:0003677
Vium3906g00028 484 Pfam MYB-CC type transfactor, LHEQLE motif 344 391 IPR025756 -
Vium3906g00028 484 MobiDBLite consensus disorder prediction 215 259 - -
Vium3906g00028 484 Gene3D - 258 317 - -
Vium3906g00028 484 MobiDBLite consensus disorder prediction 445 462 - -
Vium3906g00028 484 Pfam Myb-like DNA-binding domain 261 312 IPR001005 -
Vium3906g00028 484 FunFam Myb family transcription factor 258 316 - -
Vium3906g00028 484 MobiDBLite consensus disorder prediction 397 484 - -
Vium3906g00028 484 MobiDBLite consensus disorder prediction 397 415 - -
Vium3906g00028 484 MobiDBLite consensus disorder prediction 1 23 - -
Vium3906g00028 484 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 316 IPR017930 -
Vium3906g00028 484 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 229 470 IPR044848 GO:0003700
Vium3906g00028 484 MobiDBLite consensus disorder prediction 215 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00028 Vium-Chr3906 180052 187071 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00028 56 456 G2-like Transcription Factor Family AT4G28610 50.608 6.05e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium3906g00028 Myb_DNA-binding 9.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00028 - - gmx:100810560 775.007