Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00026 ATGGAAGCACGTTCTACTTTCTCTATTGAAAGATCAAATGCTAAGCAACACAATAACATGGGGATGTCTGAAGCATTTCCTTCATCGTTGCCTGTCCTTTCAATGCCTCTAGAAGGGACATGCCCCAAATTATCTGATTCTCAGCCAGCATTTATGGAAAAAGCGCTTAAACCAAAACCTTTTACTCATTCAAATCATTTAACTACCAGCGGAGCTGTTGGGCATATGTTTTCATCTTCTCCTGGATATTCAACTGATCTTCATCACTCATCCTTTTCATCTCATGAAAAGCACCCTATAAATACTCCTTTTATTTCACAGTCATTGAGTAACAAGGCTTCACTGCCATTATCTTATTCTTCAAATAGTGAACCATTACCTTCTACAACATCAACACTTTATTCCAATGGAAACAGTGTTTCCTGGCTTACAGATTCCCTATCTGGCTTTCTTGATTTCCCTGCCAATACCTCAATTGATAATAGTCAAGCAGAAAGCAATGCCTGCAATATTATGGCAAATGAAGAGTATTCTACTAAGCGAAGTGATTGGCAGGAGTGGGCTAACCAGTTAATCGGTGATGATGATCCCTTGACTGCTAATTGGAATGATCTTCTTGCTGACAACATTCAAGATCTTGAACCGAAGGTGTTGTACCAGGCCTCAAATTCATCTTCACAGCTTCCCATAGGACACCAATCCCAAAGCCATCAACAACTTAGTGTTTCATCTGGAGAAAATCGTGTTGGTGTTGCCCCATCTTCGTCAGCAAATTCAGTACCTTCCAAGCCACGAATGCGCTGGACACCTGAACTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACACCTAAAGGTGTGCTGAAGCTTATGAAAGTTGAAGGACTAACTATATACCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGGCCTGAGTCATCTGAAGGAGCTGCCGAGAAAAAACTAAGTCCAATTGAAGAGATATCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGCTGCGAATAGAAGAACAAGGAAGGTACCTTCAAATGATGTTTGAGAAACAGTGCAAATCTGGCATTGAAACATTTAAGGCATCATCTGCCGGTGATAGTCCATCTGGAGTTTCTTCTGATGTCATGAAAGATTCTACAGCCAAAACTGATTCCGAAACTGTCAAAGTGGATCTTTGCGAGTCAGGACCTGATCAAGCAAATGGCAGTACCAAAGTTGAGGAAAGCTCATCGAAAGTGGATGAGAAGCAGGATCCTGCTGAATGTAAAGCATCTGAGAATCCTAAGCAACATGCTAGTGTAGATAGTTCTCAAGCCCCAAAGCGTCAAAGGACTGAGGATTAA 1467 0.4158 MEARSTFSIERSNAKQHNNMGMSEAFPSSLPVLSMPLEGTCPKLSDSQPAFMEKALKPKPFTHSNHLTTSGAVGHMFSSSPGYSTDLHHSSFSSHEKHPINTPFISQSLSNKASLPLSYSSNSEPLPSTTSTLYSNGNSVSWLTDSLSGFLDFPANTSIDNSQAESNACNIMANEEYSTKRSDWQEWANQLIGDDDPLTANWNDLLADNIQDLEPKVLYQASNSSSQLPIGHQSQSHQQLSVSSGENRVGVAPSSSANSVPSKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIETFKASSAGDSPSGVSSDVMKDSTAKTDSETVKVDLCESGPDQANGSTKVEESSSKVDEKQDPAECKASENPKQHASVDSSQAPKRQRTED 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00026 488 Pfam Myb-like DNA-binding domain 265 316 IPR001005 -
Vium3906g00026 488 Coils Coil 351 371 - -
Vium3906g00026 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 261 320 IPR017930 -
Vium3906g00026 488 Gene3D - 262 321 - -
Vium3906g00026 488 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 233 474 IPR044848 GO:0003700
Vium3906g00026 488 NCBIfam myb-like DNA-binding domain, SHAQKYF class 263 317 IPR006447 GO:0003677
Vium3906g00026 488 SUPERFAMILY Homeodomain-like 261 317 IPR009057 -
Vium3906g00026 488 FunFam Myb family transcription factor 262 320 - -
Vium3906g00026 488 MobiDBLite consensus disorder prediction 449 466 - -
Vium3906g00026 488 MobiDBLite consensus disorder prediction 224 265 - -
Vium3906g00026 488 MobiDBLite consensus disorder prediction 401 488 - -
Vium3906g00026 488 MobiDBLite consensus disorder prediction 224 263 - -
Vium3906g00026 488 MobiDBLite consensus disorder prediction 401 419 - -
Vium3906g00026 488 MobiDBLite consensus disorder prediction 1 23 - -
Vium3906g00026 488 Pfam MYB-CC type transfactor, LHEQLE motif 348 395 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00026 Vium-Chr3906 180050 187071 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00026 56 460 G2-like Transcription Factor Family AT4G28610 50.839 1.72e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium3906g00026 Myb_DNA-binding 9.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00026 - - gmx:100810560 770.77