Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00022 ATGGCGCCGAATCCAAGAGTGATCGCGGCGTTTTCGGCAATGGCGAATCTCGGGATTCATGAATCAAAAGTGAAACCAGTGTTGAAGAAGCTGCTTAAATTGTATGATAAAAACTGGGAACTTATTGAAGAAGAGAGTTACAGGACTCTGGCTGATGCAATATTTGAGGAGGAAGAAAATAAGTTGCTGGAGCCAGACCAGAATAACAAAAACAAGAAGGATGAGGATGTGGACAACGAAGAAGCTCATATGCATGAGGAGCCTTTGCGACCTTTGAAGAGGTTGCGTTTGAGAGGCCAAGATGGTCAATCTTCACGCCCTCTAACTAATCGTGGCCACATCTCAGCCGCCTTTCTGTTGAAAACTCCAAAATTGGAAGAAGGCACAGTGCCTGAAATTAGTTCCAGACTGCAGCCTCAAAGCAGTGCTGCATTATCTGATGGAAATGCAAGGAATGATGCTCCTCATGTTCCCTTTCAAGATGCTATTGTCAACAGGGGAAAGCAACCTGTATCACCTCAGGTTACACCTAGAGGGGGAAGGTCTATGTCCGACCATACTTCCCTTGCAGAACCACTAAAAGAGTCAGCAGCTGAACCACGAGCTGCTCCGTTGGCCAATAACAAAATGCTTGTTCCATTTACTTTGATCAAGCCCAAGGATGAGCCTGTTGATGATTTTCCAGCTTGTGAGATTCCCCTTGCTGTGATTCCTCCTGAACCATCAAGTGGAGGAGACTCTCTAATGGATGCAGCTGAAAAGCAAGATGACCACGATACTCTGGCATCACAATGCAACGATGAAAACATTGAGCATGAATATATTATTTCTTCCTCAATTGAAGAACGAACTTCTCATGTAGATGTAGCATTGCCATCTATGGGAGAGGAACAATGTGTAAAGATAACACAAACTGATGATATTTCAAAGGAATCCGAGACCAATGTCTCACCTAGCGTGAGAGGAAATAAAGATCCAGTCATTGAAAACGAAATCAGTGTCAGGTCTTCTTCAGCCTTGGCTGAACCTGAAGTTCCTAGTTCTATACGCTGCCCAAGTGGTCAAGACGATTCTGTACTAGCTTCCAAGAAGGTTAGGACTAATGGTCTCTTACAAAGTAATGGTGGGAAGGAGCCAGAGGATCCTATATCTACAAATTCAGGTACCTCAGTGGTTGTTCCAAAATGTGAGTTTACGACTGAAAATGATGCAAGGGCTATTCACGATGTTAATGACCTGGCAAAGGGTGAAGAAACAGTAAATATTTCATGGGTGAATAACACTACTAGTGATCTTCCGCCACCCTTTCACTACATACCCCAAAACCTTGTCTACCGAGATGCTTATGTTAATTTTTCTCTATCTCGTATTGGAAATGAGGATTGTTGCTCAACTTGTAAGGGAAATTGTGTATTGTCATCTAAACCATGTCGTTGTACAAATAAAACTGGGGGTGAATTTGCTTTTACGGCACATGGCCTACTAAAGGAAGCTTTCTTGGAAGAGTGTATTGCCATTAACCGTAATTCCAAAAATTATTTCTATTGCAAAGCCTGTCCATTCGAACAATCAAAGAATGATGATTGTTTGGAACCATGTAAAGGACACCTAAAGCAGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGCTGTGCAAAACATTGTGGCAATCGGGTTGTCCAGCGTGGAATAAGTTGCAAGTTGCAGGTGTTTTTAACTTCAGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGCACCTTTGTGTGTGAGTTTGTTGGGGAAATTTTAACTGTCACAGAGTTGCACGAGAGGAACATGAAAAATCCAAAAGGTGGGAAATATACATTTCCAGTTTTATTGGATGCAGATTGGGACTTAGGAGATGTGAAGGATAGGGAAGCTCTTTGCTTATATGCGGCATCATATGGAAATGTTGCTAGATTTATTAATCACAGATGCTTGGATGCAAATTTAATTCAGATCCCAGTTGAAGTCGAGTGCCCAACTCATCAGTACTATCATTTTGCGTTCTTTGCAACCAGAAAAATAGCAGCACAGGAAGAACTCACTTGGGATTATGGCATCAACTTTGATGATCACGATGAGTGTGTTGAGCTTTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAATATTAAGCGATCACATAGATCCATCAGATCGACAGTTGCATGCTGA 2214 0.4232 MAPNPRVIAAFSAMANLGIHESKVKPVLKKLLKLYDKNWELIEEESYRTLADAIFEEEENKLLEPDQNNKNKKDEDVDNEEAHMHEEPLRPLKRLRLRGQDGQSSRPLTNRGHISAAFLLKTPKLEEGTVPEISSRLQPQSSAALSDGNARNDAPHVPFQDAIVNRGKQPVSPQVTPRGGRSMSDHTSLAEPLKESAAEPRAAPLANNKMLVPFTLIKPKDEPVDDFPACEIPLAVIPPEPSSGGDSLMDAAEKQDDHDTLASQCNDENIEHEYIISSSIEERTSHVDVALPSMGEEQCVKITQTDDISKESETNVSPSVRGNKDPVIENEISVRSSSALAEPEVPSSIRCPSGQDDSVLASKKVRTNGLLQSNGGKEPEDPISTNSGTSVVVPKCEFTTENDARAIHDVNDLAKGEETVNISWVNNTTSDLPPPFHYIPQNLVYRDAYVNFSLSRIGNEDCCSTCKGNCVLSSKPCRCTNKTGGEFAFTAHGLLKEAFLEECIAINRNSKNYFYCKACPFEQSKNDDCLEPCKGHLKQKFIKECWSKCGCAKHCGNRVVQRGISCKLQVFLTSDGKGWGLRTLEDLPKGTFVCEFVGEILTVTELHERNMKNPKGGKYTFPVLLDADWDLGDVKDREALCLYAASYGNVARFINHRCLDANLIQIPVEVECPTHQYYHFAFFATRKIAAQEELTWDYGINFDDHDECVELFQCRCGSKFCRNIKRSHRSIRSTVAC 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00022 737 MobiDBLite consensus disorder prediction 129 199 - -
Vium3906g00022 737 SMART preset_2 410 550 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium3906g00022 737 ProSiteProfiles Pre-SET domain profile. 462 563 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium3906g00022 737 Gene3D - 1 60 IPR043017 -
Vium3906g00022 737 SUPERFAMILY SET domain 420 722 IPR046341 -
Vium3906g00022 737 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 -
Vium3906g00022 737 ProSiteProfiles SET domain profile. 566 699 IPR001214 GO:0005515
Vium3906g00022 737 MobiDBLite consensus disorder prediction 351 389 - -
Vium3906g00022 737 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 736 IPR025776 -
Vium3906g00022 737 MobiDBLite consensus disorder prediction 304 389 - -
Vium3906g00022 737 Pfam SET domain 578 699 IPR001214 GO:0005515
Vium3906g00022 737 SMART set_7 566 705 IPR001214 GO:0005515
Vium3906g00022 737 Pfam Pre-SET motif 414 558 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium3906g00022 737 MobiDBLite consensus disorder prediction 59 100 - -
Vium3906g00022 737 MobiDBLite consensus disorder prediction 59 114 - -
Vium3906g00022 737 CDD SET_SETDB-like 434 699 - -
Vium3906g00022 737 MobiDBLite consensus disorder prediction 133 148 - -
Vium3906g00022 737 MobiDBLite consensus disorder prediction 167 183 - -
Vium3906g00022 737 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 732 - -
Vium3906g00022 737 Gene3D SET domain 413 724 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00022 Vium-Chr3906 154548 162710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00022 542 699 C2H2 Transcription Factor Family AT2G23740 42.236 7.86e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium3906g00022 Pre-SET 4.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00022 - - var:108323268 1377.07