Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00011 ATGAAGAAGATCAAGAACCAAATGAAAATCCAGCTTTTCATCTTCTTTTGCTACATTGGTTGTTCCTCCTATGGTTTTTCTGCTGCTGTAAATGATGAAGTATCGACTTTGCTTTCCATGAAAGCAGGTCTCATTGATCCATTGAACACTCTTCGGGATTGGAAACTGCATGACAAAGCACCGCTAAAGGATGCATTTCATTGTAGCTGGACTGGCATCAAATGCAACTCAGCTGGAGCCGTAGAGGAGCTTGATCTGTCCCACAAGAATCTCAGTGGTACAGTATCCGATGTTATACAGAGACTTAAAAGTCTTACCTCTCTCAACTTGTGTTGCAATGCTTTTTCATCACCATTGCCAAAATCCTTAGCCAATCTCACCACACTTAACAAACTTGATGTGAGCCAAAATTCCTTCAATGGTGACTTTCCATTAGGCCTTGGAAGAGCATGGAGACTCATGACCTTAAATGCATCCAGCAATGAATTCTCAGGTTCTCTTCCTGAGGATCTTGGAAATGCCTCTTCCTTAGAGATGCTTGATCTCAGAGGCAGTTTTTTTGAAGGGTCAGTTCCAAAATCGTTCAGTAACTTGCATAAGTTGAAGTTCCTTGGTCTATCAGGGAACAATCTCACCGGTAAAATTCCTGGAGAGCTGGGACAACTTTCATCACTGGAGTATATGATCCTTGGATATAATGAATTTGAAGGCGTCATTCCAGAAGAGTTTGGCAACCTCACCAATCTTAAGTATCTTGATTTAGCAGTGGCCAATCTTGGTGGTGAGATTCCAAGTGTATTGGGAAAGCTCAAGTTATTGAATACGGTTTTCTTTTACAACAACAATTTTGATGATAGAATTCCAGCAGCAATTGGCAATATGACTTCTTTGCAGTTGCTGGATCTTTCTGATAACATGTTGTCAGGAAAAATTCCAGCTGAAATAAGTCAGCTGAAGAATTTAAAACTTCTGAACTTGATGGGCAACCAGTTGTCTGGTCCTGTGCCTTCTGGCTTTGGAGATTTGCCACAACTGGAGGTACTTGAGCTATGGAACAATTCCTTGTCAGGGCCATTGCCTAGTAACCTTGGCAAAAATTCACCATTGCAATGGTTAGATGTGTCATCCAATTCATTCTCTGGAGAGATTCCAGAAACTCTTTGCAGCCAGGGCAATCTCACCAAGCTTATACTATTCAACAATGCTTTCTCTGGTCCAATTCCATCAAGCCTATCAACGTGCTTTTCACTTGTACGTGTTCGAATTCACAACAATTTTCTTTCAGGGACAATTCCTGTGGGTCTTGGCAAGCTTGGGAAGCTTCAAAGGTTAGAATTGGCTAACAATAGTCTTTCTGGTGGAATTCCTGATGACATTGCTTCTTCCACATCCCTTTCCTTCATTGATCTCTCAAGAAACAAACTCCATTCTTCTCTTCCCTCCTCCGTCCTTTCCATTCCAAACCTGCAAGCTTTCATTGTCTCCAACAACAACTTGGAAGGAGAAATCCCAGACCAATTCCAGGACTGTCCATCACTTGCAGTTCTTGATCTCTCATCAAATCATCTATCTGGAAGCATTCCAGCAAGCATTGCTTCTTGTCAGAAGTTAGTAAATTTGAACCTCCAAAACAACCAATTGACTGGTGAAATCCCAAAATCATTAGCTAAGATGCCTTCATTGGCCATGGTTGACCTTTCCAACAATTCTCTGACAGGCCAAATACCTGAAAGCTTTGGAATTTCTCCAGCTCTTGAAGCACTCAATGTCTCATACAATAAGCTGGAAGGCCCAGTCCCAGCGAACGGAATACTAAGAACTGTAAACCCAAATGACCTTGTCGGCAATGTTGGCCTATGTGGTGGTGTCCTCCCTCCATGTGACCAAAACTCTGCATACTCATCAAGGAAACGAAGCTTGCGCACAAAGCATATGATTACAGCATGGATCACTGGAATATCATCAATCCTAGTTATTGGGATAGCGATTGTGGTTGCTAGATCTTTGTACATAAGATGGTACACTGATGGGTTTTGCTTCCGAGAAAGATTTTACAAGGGTAGCAAAGGATGGCCCTGGAGATTGATGGCATTTCAGAGGCTTGGTTTTACTAGTACTGAGATTCTAGCTTGCATCAAGGAAACAAATGTGATTGGCATGGGAGCCACTGGGATTGTTTATAAGGCTGAGGTACCGCAATCAAACACAGTTGTGGCAGTGAAAAAATTGTGGAGAACAGGAACTGATATTGAAGTTGGAAGTAGTGACGACCTTGTGGGGGAGGTGAATCTTTTGGGGAGACTAAGGCATAGAAACATTGTTAGACTATTAGGATTTCTTCATAATGACATTGATGTGATGATAGTTTATGAATTCATGCACAATGGCAACCTAGGAGAAGCCTTGCACGGTAGACAAGCAACAAGATTGCTTGTAGACTGGGTTTCACGGTACAACATAGCTCTAGGAGTTGCTCAAGGACTTGCTTATCTTCATCATGACTGTCATCCCCCCGTTATCCATCGAGACATCAAGTCAAACAATATATTGCTTGATGCAAATCTTGAGGCACGGATAGCAGATTTTGGTTTAGCCAAGATGATGATCCAGAAGAATGAAACAGTCTCCATGGTTGCTGGATCTTATGGTTATATTGCCCCTGAATATGGATATGCCTTGAAGGTAGATGAAAAGATTGATGTTTACAGTTATGGAGTAGTTTTGTTGGAGCTTCTCACAGGAAAGAGGCCTTTAGATTCAGACTTTGGAGAGTCAATAGACATTGTAGAGTGGATTAGAATGAAGATTAGAGACAACAAATCACTGGAAGAAGCATTAGACCCCAGTGTAGGAAATAGCAGGCATGTTGTAGAAGAGATGCTTTTAGTTCTAAGAATAGCGATTCTGTGCACTGCCAAGCTCCCCAAGGACAGACCAACCATGAGGGATGTCATTATGATGCTTGGAGAGGCTAAGCCTCGAAGAAAGAGCGGTGGCAATGATGCAGCTAACAACAAAGAGTCACCAGTTTTTAGCACATCACCAGTTAATGGCCTAATGTAG 3063 0.4205 MKKIKNQMKIQLFIFFCYIGCSSYGFSAAVNDEVSTLLSMKAGLIDPLNTLRDWKLHDKAPLKDAFHCSWTGIKCNSAGAVEELDLSHKNLSGTVSDVIQRLKSLTSLNLCCNAFSSPLPKSLANLTTLNKLDVSQNSFNGDFPLGLGRAWRLMTLNASSNEFSGSLPEDLGNASSLEMLDLRGSFFEGSVPKSFSNLHKLKFLGLSGNNLTGKIPGELGQLSSLEYMILGYNEFEGVIPEEFGNLTNLKYLDLAVANLGGEIPSVLGKLKLLNTVFFYNNNFDDRIPAAIGNMTSLQLLDLSDNMLSGKIPAEISQLKNLKLLNLMGNQLSGPVPSGFGDLPQLEVLELWNNSLSGPLPSNLGKNSPLQWLDVSSNSFSGEIPETLCSQGNLTKLILFNNAFSGPIPSSLSTCFSLVRVRIHNNFLSGTIPVGLGKLGKLQRLELANNSLSGGIPDDIASSTSLSFIDLSRNKLHSSLPSSVLSIPNLQAFIVSNNNLEGEIPDQFQDCPSLAVLDLSSNHLSGSIPASIASCQKLVNLNLQNNQLTGEIPKSLAKMPSLAMVDLSNNSLTGQIPESFGISPALEALNVSYNKLEGPVPANGILRTVNPNDLVGNVGLCGGVLPPCDQNSAYSSRKRSLRTKHMITAWITGISSILVIGIAIVVARSLYIRWYTDGFCFRERFYKGSKGWPWRLMAFQRLGFTSTEILACIKETNVIGMGATGIVYKAEVPQSNTVVAVKKLWRTGTDIEVGSSDDLVGEVNLLGRLRHRNIVRLLGFLHNDIDVMIVYEFMHNGNLGEALHGRQATRLLVDWVSRYNIALGVAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIQKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELLTGKRPLDSDFGESIDIVEWIRMKIRDNKSLEEALDPSVGNSRHVVEEMLLVLRIAILCTAKLPKDRPTMRDVIMMLGEAKPRRKSGGNDAANNKESPVFSTSPVNGLM 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00011 1020 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 30 185 - -
Vium3906g00011 1020 FunFam Leucine-rich repeat receptor protein kinase EMS1 287 370 - -
Vium3906g00011 1020 SUPERFAMILY Protein kinase-like (PK-like) 707 988 IPR011009 -
Vium3906g00011 1020 FunFam MDIS1-interacting receptor like kinase 1 797 1007 - -
Vium3906g00011 1020 MobiDBLite consensus disorder prediction 1002 1020 - -
Vium3906g00011 1020 Gene3D Phosphorylase Kinase; domain 1 712 796 - -
Vium3906g00011 1020 SUPERFAMILY RNI-like 287 597 - -
Vium3906g00011 1020 Pfam Protein kinase domain 714 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3906g00011 1020 Gene3D Ribonuclease Inhibitor 204 273 IPR032675 -
Vium3906g00011 1020 Gene3D Ribonuclease Inhibitor 274 339 IPR032675 -
Vium3906g00011 1020 MobiDBLite consensus disorder prediction 993 1020 - -
Vium3906g00011 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 839 851 IPR008271 GO:0004672|GO:0006468
Vium3906g00011 1020 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 371 631 - -
Vium3906g00011 1020 ProSiteProfiles Protein kinase domain profile. 712 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3906g00011 1020 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 186 286 - -
Vium3906g00011 1020 Gene3D Ribonuclease Inhibitor 340 635 IPR032675 -
Vium3906g00011 1020 ProSitePatterns Protein kinases ATP-binding region signature. 718 742 IPR017441 GO:0005524
Vium3906g00011 1020 Gene3D Ribonuclease Inhibitor 29 194 IPR032675 -
Vium3906g00011 1020 SMART LRR_typ_2 342 366 IPR003591 -
Vium3906g00011 1020 SMART LRR_typ_2 438 462 IPR003591 -
Vium3906g00011 1020 SMART LRR_typ_2 486 509 IPR003591 -
Vium3906g00011 1020 SMART LRR_typ_2 198 222 IPR003591 -
Vium3906g00011 1020 SMART LRR_typ_2 510 534 IPR003591 -
Vium3906g00011 1020 SMART LRR_typ_2 558 582 IPR003591 -
Vium3906g00011 1020 SMART LRR_typ_2 294 318 IPR003591 -
Vium3906g00011 1020 SMART LRR_typ_2 102 125 IPR003591 -
Vium3906g00011 1020 SMART LRR_typ_2 246 270 IPR003591 -
Vium3906g00011 1020 SMART serkin_6 712 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3906g00011 1020 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 242 989 - -
Vium3906g00011 1020 SUPERFAMILY L domain-like 67 357 - -
Vium3906g00011 1020 FunFam MDIS1-interacting receptor like kinase 1 712 796 - -
Vium3906g00011 1020 Gene3D Transferase(Phosphotransferase) domain 1 797 1012 - -
Vium3906g00011 1020 Pfam Leucine rich repeat N-terminal domain 31 76 IPR013210 -
Vium3906g00011 1020 Pfam Leucine rich repeat 487 547 IPR001611 GO:0005515
Vium3906g00011 1020 Pfam Leucine rich repeat 280 331 IPR001611 GO:0005515
Vium3906g00011 1020 Pfam Leucine rich repeat 81 138 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00011 Vium-Chr3906 91818 95595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00011 11 1020 Receptor kinase-like Gene Family AT1G08590 60.544 0.0 1185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium3906g00011 Pkinase 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00011 - - gmx:100811284 1816.2