Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00004 ATGGCCGTCGATGAAATTGGAATCTCGTCTCCGACGTCGTTTTCTTATTATTCTTCTTCTTCGGGATCGTTTGAGAGTATTTGGAGTGCCATCCTTGGATTGCCTTGGGTGGAAGTGGTGGCAATCTGTGCCAACTTGACACTCTTTATTGTGTTTGTGTTCGTTCTTTTGGCGAGGAGGGTGGCTGTGTGTTTAGGGGTTGGAGTTAGATTTGGTAAGGACAATGGAACCGGCAATGCCAGCCGCGGCCGTGATAGTGTTGATTTAGAAACACGTGACGTTCGGATTGGAACGTGGTTCAAGTTGTCGGTGTTGTCTTGTTTCTATGTTTTGTTGGTGCATGTTTTGGTGTTGGGGTTTGATGGGTTTGCCTTGATCAGAGAAAGGGATGGGGATTTGGGTTTGGCTCTTCTTTCTGTGCCTCTAGTGCAGGGTTTAGCTTGGGTTGCTCTTTGCTTCTCGGCTTTGCAGTGCAAGTTCAAGGCGCGTGAGAGGTTTCCAAATTTGCTCAGAGTTTGGTGGTTTGTGTTATTTGTTGTTTGTTTGTGTGGTTTGTACGTTGATGGGAGAGGGGTTTGGATGGAAGGTTCCAAGCACCTGCGTTCTCATGTTGTGGCGAATTTTGCGGTCACTCCTGCTCTTGGCTTTTTGTGTATTGTTGCAATCAGGGGTGTTACTGGTGTAAAGATATGTAGGACTTCTGATGAGCAACAACCATTGCTTGTTGAGGAAGAACCCGGCTGTCTTAAGGTTACTCCCTATAATGATGCTGGACTTTTTAGCTTGGCCACTTTGTCTTGGTTGAATCCCCTTCTTTCCATTGGCGCAAAAAGGCCTCTTGAGCTTAAGGACATTCCCCTTGTTGCACCTAATGACCGATCTAAAACAAACTATAAGCTTGTGAATTCTAATTGGGAGAAATTGAAGGCAGAAAGCTCATCATCCGGGCAGCCTTCGTTAGCATGGGCGCTTCTCAAGTCATTTTGGAAGGAGGCGGCTTGTAATGCCATATTTGCTGGTGTAACCACTCTAGTTTCGTACGTTGGTCCATACATGATAAGTTATTTTGTTGATTTCTTAGTTGGCAAAGAGGTTTTCCCACATGAGGGGTATGTTCTTGCAGGGATATTCTTTGCGGCTAAGCTTGTGGAGACCATGACTACCAGGCAGTGGTATCTAGGGGTGGACATCATGGGTATGCATGTGAGGTCGGCTCTAACTGCAATGGTATATCGAAAGGGGTTAAGGATATCAAGCTTGGCCAAGCAAAGTCACACAAGTGGGGAAATTGTTAACTACATGGCTATTGATGTTCAGAGGGTCGGGGACTACTCTTGGTATCTCCATGACATGTGGATGCTTCCTCTCCAGATTGTTCTTGCCCTGGCAATTTTGTATAAGAATGTTGGAATTGCCTCTGTTGCAACTCTGATTGCTACAATAATTTCCATTGTCGTCACTGTTCCCGTGGCCAGGATCCAAGAAGATTATCAAGACAGATTAATGGCTGCTAAGGATGAGAGGATGAGAAAAACATCTGAGTGCCTGAGGAATATGAGGATTCTCAAACTTCAAGCTTGGGAAGACAGATATAGAGTGAAACTGGAGGATATGCGTGGAGTAGAATTCAAATGGCTTCGGAAAGCCCTCTATTCTCAGGCTTTCATAACTTTTATATTCTGGAGCTCGCCGATTTTTGTTTCAGCAGTCACTTTCGGTACTTCCATATTGTTGGGTGGTCAGCTGACTGCTGGGGGTGTACTTTCTGCTCTGGCTACTTTCAGGATCCTGCAAGAACCTTTGAGGAATTTTCCAGACTTGGTGTCAACAATGGCTCAAACAAAAGTTTCTCTTGATCGGTTATCTGGCTTCCTTCTGGAGGAAGAATTGCAGGAAGATGCAACTATTGCCTTGCCACAAGGCATCACTAACATTGCTATAGAAATTAAGGACGGTGTCTTCTGTTGGGACCTTTCATCTTCCAGACCTACTCTATCAAGGATAAGAATGAAAGTTGAAAAAGGGATGCGCGTGGCTGTTTGTGGCATGGTTGGTTCTGGGAAATCAAGCTTTCTGTCTTGCATCCTCGGAGAAATTCCCAAGACTTCTGGGGAAGTCAGAGTGTGTGGATCTTCTGCATATGTCTCCCAATCAGCATGGATACAATCAGGAACTATAGAAGAAAATATCCTCTTTGGAAGCCCAATGGACAAAGCAAAGTACAAGAGTGTTCTTCAAGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACACGGTGATCAGACAATTATAGGTGATAGAGGTATAAACCTGAGTGGTGGCCAGAAGCAGCGGGTTCAGCTTGCACGAGCACTCTACCAAGATGCTGATATTTATCTTCTTGATGATCCCTTCAGTGCAGTTGACGCTCACACTGGATCTGACTTGTTCAGGGATTATATATTGACAGCACTAGCAGATAAAACAGTCATTTATGTGACGCATCAAGTTGAATTTCTTCCGGCTGCTGATTTGATACTGGTGCTTAAAGAAGGCTGCATCATACAGTCAGGAAAGTATGACGAACTTTTACAAGCAGGAACAGATTTTAATACTCTGGTTTCAGCCCACCATGAAGCCATTGAGGCTATGGATATCCCTACTCACTCCTCTGAAGATTCAGATGAAAATTTATCTCTAGAGGCATCTGTTATGACCAGTAAGAAATCCATATGTTCTGCAAATGATATAGACAGTTTGGCCAAGGAAGTGCAAGAAGGAGCATCTACTTCAGATCAAAAAGCAATTAAGGAGAAGAAGAAAGCAAAACGATCGAGAAAGAAACAGCTTGTTCAAGAAGAAGAGAGGATTAGAGGCAGAGTCAGCATGAAGGTCTACTTGTCATACATGGCAGCCGCATATAAAGGCTTGTTAATTCCTCTCATAATCATTGCACAAGCATTGTTTCAGTTCCTTCAGATTGCTAGCAATTGGTGGATGGCTTGGGCTAACCCTCAAACAGAAGGAGACCTGCCCAAAGTAACTCCCTCAGTTCTTCTTCTTGTATACATGGCCCTTGCTTTTGGCAGCTCATGGTTTATATTTGTAAGGGCTGTTCTGGTGGCTACATTTGGCCTTGCAGCTGCACAGAAGCTATTTTTAAAAATGCTTAGAAGTGTTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCTTGAATAGGGTATCGATTGATCAAAGTGTTGTGGATCTTGACATTCCTTTTAGACTTGGCGGGTTTGCTTCAACAACAATTCAACTTATTGGTATTGTTGGGGTAATGACAGAAGTTACATGGCAAGTTTTACTGTTAGTTGTCCCAATGGCTGTTGCTTGTTTGTGGATGCAGAAATACTATATGGCATCCTCCAGGGAACTGGTTCGTATTGTTAGCATCCAGAAGTCTCCAATTATACATCTTTTTGGTGAGTCAATTGCTGGAGCATCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGCGGAACCTCTATCTTCTTGATTGTTTTGCACGACCATTCTTTTGTAGTCTTTCTGCAATTGAGTGGCTCTGCCTGCGGATGGAGTTACTGTCAACCTTTGTATTTTCTTTCTGCATGGTATTGCTTGTGAGTTTTCCTCGAGGAAGTATAGACCCCAGCATGGCTGGACTTGCTGTGACATATGGCCTAAATTTAAATGCACGCTTATCACGGTGGATACTCAGCTTTTGCAAACTTGAAAATAAAATTATATCCATTGAAAGAATATATCAGTACAGCCAAATTCCTAGTGAAGCACCCACTATAATTGAAGATTCTCGCCCTCCATCCTCATGGCCAGAAAATGGGACAATCGAAATAATTGATTTGAAGGTCCGTTACAAGGAGAACCTTCCTTTGGTGCTTCATGGAGTAACATGCACATTTCCTGGTGGAAAGAAGATTGGAATAGTTGGACGAACTGGCAGTGGAAAATCTACTTTAATTCAGGCACTATTTCGATTGATTGAACCAACAAGTGGAAGTATCCTTATTGACAACATAAATATTTCAGAGATTGGCCTTCATGATCTTCGCAGCCATCTCAGTATCATCCCACAAGATCCAACTTTATTTGAAGGGACTATCAGAGGCAATCTTGATCCTCTTGAGGAGCACTCAGATAAAGAGATTTGGGAGGCACTTGACAAGTCTCAGCTTGGAGAGGTCATCCGTGACAAAGGACAACAGCTTGATACACCAGTTCTAGAAAATGGAGATAATTGGAGTGTAGGACAGCGACAACTTGTTGCTCTGGGCCGAGCACTGCTGCAGCAGTCAAGAATACTAGTACTGGATGAAGCAACGGCATCAGTTGATACCGCCACAGATAATCTTATTCAGAAGATCATCCGAAGTGAATTCAAGGCCTGCACTGTCTGCACCATTGCACATCGTATACCTACTGTCATCGACAGTGATCAAGTTCTTGTGCTAAGTGATGGTCGAGTTGCAGAGTTTGACACGCCTACAAAACTATTAGAGGACAAGTCTTCCATGTTTCTGAAGTTGGTGACTGAGTATTCATCACGTTCGAGTGGTATACCAGAATTTTAG 4617 0.4345 MAVDEIGISSPTSFSYYSSSSGSFESIWSAILGLPWVEVVAICANLTLFIVFVFVLLARRVAVCLGVGVRFGKDNGTGNASRGRDSVDLETRDVRIGTWFKLSVLSCFYVLLVHVLVLGFDGFALIRERDGDLGLALLSVPLVQGLAWVALCFSALQCKFKARERFPNLLRVWWFVLFVVCLCGLYVDGRGVWMEGSKHLRSHVVANFAVTPALGFLCIVAIRGVTGVKICRTSDEQQPLLVEEEPGCLKVTPYNDAGLFSLATLSWLNPLLSIGAKRPLELKDIPLVAPNDRSKTNYKLVNSNWEKLKAESSSSGQPSLAWALLKSFWKEAACNAIFAGVTTLVSYVGPYMISYFVDFLVGKEVFPHEGYVLAGIFFAAKLVETMTTRQWYLGVDIMGMHVRSALTAMVYRKGLRISSLAKQSHTSGEIVNYMAIDVQRVGDYSWYLHDMWMLPLQIVLALAILYKNVGIASVATLIATIISIVVTVPVARIQEDYQDRLMAAKDERMRKTSECLRNMRILKLQAWEDRYRVKLEDMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFGTSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSGFLLEEELQEDATIALPQGITNIAIEIKDGVFCWDLSSSRPTLSRIRMKVEKGMRVAVCGMVGSGKSSFLSCILGEIPKTSGEVRVCGSSAYVSQSAWIQSGTIEENILFGSPMDKAKYKSVLQACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFRDYILTALADKTVIYVTHQVEFLPAADLILVLKEGCIIQSGKYDELLQAGTDFNTLVSAHHEAIEAMDIPTHSSEDSDENLSLEASVMTSKKSICSANDIDSLAKEVQEGASTSDQKAIKEKKKAKRSRKKQLVQEEERIRGRVSMKVYLSYMAAAYKGLLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDLPKVTPSVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTEVTWQVLLLVVPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLSAIEWLCLRMELLSTFVFSFCMVLLVSFPRGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPTIIEDSRPPSSWPENGTIEIIDLKVRYKENLPLVLHGVTCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTSGSILIDNINISEIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEVIRDKGQQLDTPVLENGDNWSVGQRQLVALGRALLQQSRILVLDEATASVDTATDNLIQKIIRSEFKACTVCTIAHRIPTVIDSDQVLVLSDGRVAEFDTPTKLLEDKSSMFLKLVTEYSSRSSGIPEF 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00004 1538 FunFam ABC transporter C family member 5 632 879 - -
Vium3906g00004 1538 FunFam ABC transporter C family member 5 936 1273 - -
Vium3906g00004 1538 ProSitePatterns ABC transporters family signature. 772 786 IPR017871 GO:0005524|GO:0016887
Vium3906g00004 1538 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 336 613 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3906g00004 1538 CDD ABC_6TM_ABCC_D2 973 1267 IPR044726 GO:0140359
Vium3906g00004 1538 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 647 870 IPR003439 GO:0005524
Vium3906g00004 1538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1283 1522 IPR027417 -
Vium3906g00004 1538 Gene3D - 1275 1528 IPR027417 -
Vium3906g00004 1538 FunFam ABC transporter C family member 10 316 629 - -
Vium3906g00004 1538 SMART AAA_5 1318 1503 IPR003593 GO:0016887
Vium3906g00004 1538 SMART AAA_5 674 855 IPR003593 GO:0016887
Vium3906g00004 1538 CDD ABC_6TM_ABCC_D1 334 621 IPR044746 GO:0140359
Vium3906g00004 1538 Gene3D ABC transporter type 1, transmembrane domain 321 622 IPR036640 GO:0005524|GO:0016020
Vium3906g00004 1538 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1292 1526 IPR003439 GO:0005524
Vium3906g00004 1538 CDD ABCC_MRP_domain2 1290 1510 - -
Vium3906g00004 1538 Pfam ABC transporter 1309 1457 IPR003439 GO:0005524
Vium3906g00004 1538 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 975 1245 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3906g00004 1538 Coils Coil 930 950 - -
Vium3906g00004 1538 FunFam ABC transporter C family member 3 1275 1527 - -
Vium3906g00004 1538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 869 IPR027417 -
Vium3906g00004 1538 Pfam ABC transporter 665 799 IPR003439 GO:0005524
Vium3906g00004 1538 SUPERFAMILY ABC transporter transmembrane region 972 1272 IPR036640 GO:0005524|GO:0016020
Vium3906g00004 1538 Gene3D - 623 890 IPR027417 -
Vium3906g00004 1538 Gene3D ABC transporter type 1, transmembrane domain 934 1273 IPR036640 GO:0005524|GO:0016020
Vium3906g00004 1538 Pfam ABC transporter transmembrane region 337 601 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3906g00004 1538 Pfam ABC transporter transmembrane region 975 1216 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3906g00004 1538 SUPERFAMILY ABC transporter transmembrane region 322 627 IPR036640 GO:0005524|GO:0016020
Vium3906g00004 1538 CDD ABCC_MRP_domain1 647 846 - -
Vium3906g00004 1538 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 255 1529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00004 Vium-Chr3906 45908 60272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00004 647 863 Calmodulin-binding Proteins AT2G36910 31.356 6.64e-21 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00004 - - gmx:100814850 2752.62