Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3906g00001 ATGGAGGGTGGGGGTAGTTTAAGGATTGGAAGTTCATCCATTTGGAGGAACAGTGACGCGGAGATATTCTCAAACTCATTCGAACAGGAGAACGATGAAGAGGCTCTCAAATGGGCTGCTATTCAGAAGCTTCCCACGGTTGCACGTATGAGGAAAGCTTTGCTCACCTCACCTGATGGGGAAGCCAATGAGATCGATGTACAGAAACTTGGGTTGCAAGAAAAGAGAGCTTTACTAGAAAGACTCGTGAGAACTGCAGAAGAGGACAATGAGAGGTTTTTGCTGAAGCTCAAGGACAGGATCGATAGAGTTGGAATTGATCTTCCTACCATAGAGGTTCGTTTTGAGAACTTGAACATCGAAGCAGAAGCTCGTGTAGGAACTAGAGCTTTGCCTACGTTCACTAACTTCATGGTTAATATAGTGGAGGGCCTGATAAACTCTCTTCATATACTTCCAACCATGAAACAACATTTAAACATTCTCCAGAATGTTAGTGGAAAAATAAAGCCTGGCAGAATGACATTGCTTTTAGGCCCTCCAAGTTCTGGGAAAACCACACTCTTGTTAGCCTTGGCTGGAAAACTTGATCCAAAACTAAAGTTCTCTGGAAAGGTAACTTATAATGGTCACGAGATGAATGAGTTTGTACCCCAAAGAACTGCTGCTTATGTGAATCAAAATGATCTTCACATAGGAGAAATGACAGTTAGAGAAACTTTGGCCTTCTCGGCAAGAGTCCAAGGAGTTGGACCTCGTTATGACTTGCTAGCGGAATTGTCCAGAAGAGAAAAGGAGGCAAGCATCAAGCCTGATCCAGATGTTGATGCCTACATGAAGGCTGTAGCATCCGAAGGCCAGAAGGCAAATATGATAACAGACTACGTACTGAGGATTTTGGGACTAGAGGTTTGTGCTGATACCGTTGTAGGAAATGCTATGTTAAGAGGTATCTCTGGTGGACAAAGGAAACGTGTTACAACAGGGGAGATGCTGGTTGGACCAGCTAAAGCTCTTTTCATGGATGAAATATCCACTGGGTTGGATAGCTCAACAACTTTTCAAATTGTGAATTCACTCAAGCAATATGTTCATATTCTCAAAGGAACCACAGTCATCTCACTCCTGCAGCCAGCACCAGAGACTTACAATCTATTTGATGACATTATTCTACTCTCTGATAGTCATATAGTGTACCAGGGTCCACGCGAATATGTGCTTGAATTTTTCGAATTAATGGGTTTTAAATGTCCTGAGAGGAAAGGAGTGGCAGACTTTTTGCAAGAGGTAACATCAAGGAAGGATCAGGAGCAGTACTGGGCACACAAAGATCAACCTTACAGATTTGTCACAGCCAAAGAGTTTTCAGAGGCACATAAATCATTTCATGTTGGGAGAAGCCTTCGTGAAGAACTTGATAGGGAATTTGACAAGTCTAAGAGTCACCCAGCTGCTTTGACAACCAAAAAGTATGGAGTGGGAAAATGGGAGTTGTTAAAAGCTTGCTTATCCAGAGAATATTTACTTATGAAACGCAATTCATTCGTTTACACCTTCAAGCTTTTCCAACTCGCAGCATTGGCAATTATTGCCATGACCATTTTCTTCCGGACAGAGATGCACAGAGATTCAGTGACTCATGGAGGCATATATGTGGGTGCCTTGTTTTATGGGGTTGTTGTGACTATGTTCAATGGATTGGCTGAACTTTCCATGGTTGTTTCAAGGCTTCCTGTTTTCTACAAACAAAGGGATTATCTTTTTTTCCCTTCATGGGTATATGCTCTTCCTGCATGGATCCTAAAATTCCCTTTGACTTTTATGGAAGTGGGTGTTTGGGTATTCCTTACCTACTATGTCATTGGTTTTGATCCACATGTTGGAAGATTGTTTAGGCAATACCTTGTACTTGCACTAGTAAATCAAATGGCTTCGGCACTGTTCAGATTAATTGCAGCAGTTGGGAGGGAAATGACAGTAGCTCTAACACTTGGGTCGTTTACACTGGCGATCCTTTTTGCTATGAGTGGTTTTGTCCTATCAAAAGACAATATAAAAAAATGGTGGCTGTGGGGCTTCTGGATATCACCTATGATGTATGGGCAGAATGCCATGGTAAATAATGAGTTTCTTGCAGAAAGATGGAGACATGTTCTACCAAACTCGACTGAGCCTCTAGGAGTTGAAATTTTGAAATCGCGGGGATTCTTCACTCAGTCATACTGGTACTGGATAGGTGTTGGAGCTTTGATTGGATATACATTACTTTTCAACCTTGGCTACATCCTTGCCCTTAAATACTTAAATCCATTTGGGAAACATCGGGCTGTTATATCAGATGAATCTCAAAGCAATGACCAGAATGGTGGTAGTAAAAAGGGAAATAATGTGATGAAGAACACAAAACATAGCTTTTCTCAGTACTCAAATAAAGTGAGAAATGGTGAAAGTACAAGTGGAAGCACCTCCCCCCACTCTTCATCTACTAGGCACGAAGCAGTTGATGCAGAGACAAATCATAACAGGAAAAGAGGAATGGTTCTTCCATTTGAACCTCATTCCATCACCTTTGATGATGTAACATATTCTGTCGACATGCCAGTGGAAATGAAGAACAGAGGTTTTGTTGAGGATAAATTGGTTCTTTTGAAGGGTGTCAGTGGAGCTTTCAGACCAGGTGTCCTTACCGCTCTAATGGGTGTGACTGGTGCTGGAAAAACAACTCTGATGGATGTACTTGCTGGTAGAAAAACTGGAGAATATGTTGGAGGAAACATCACAATCTCCGGGTATAAGAAGAAGCAAGAAACATTTGCAAGGATTTCTGGATACTGTGAGCAAAATGATATCCACTCTCCTCATGTTACAGTATACGAGTCCCTGCTTTATTCAGCATGGCTTCGGTTGTCCCCAGAAATCAATGATGAAACAAGGAAGATGTTCATTGAGGAAGTTATGGAACTTGTGGAACTGAAGCCACTAAGGCACGCATTAGTTGGATTACCTGGTGTTAATGGTCTCTCAACTGAGCAACGGAAAAGGTTGACTATTGCAGTTGAACTTGTAGCAAATCCTTCCATAATATTCATGGATGAGCCAACTTCTGGATTAGATGCAAGAGCTGCTGCAATTGTCATGAGAGCAGTTAGGAACACAGTAGACACTGGAAGAACAGTTGTCTGTACCATCCATCAGCCAAGCATAGATATATTTGAATCTTTTGATGAGCTTTTGCTAATGAAGCAAGGAGGGCAAGAAATATATGTGGGGCCACTTGGACATCATTCTTCCCATTTAATTAGTTACTTTGAGGAAATCCAAGGTGTCAGTAAAATAAAAGATGGCTATAATCCAGCAACATGGATGTTGGAAGTTTCAACATTAGCAAAAGAAATGGAATTGGGGATCGATTTTGCAGAGGTGTACAAAAGTTCAGAGCTATACAGGAGAAATAAAGGACTTATTAAAGAATTGAGTACACCAGCTCCTGGTTCCAAAGACCTTTATTTTCCTTCACAGTACTCAACTTCGTTCTTCACTCAATGCATGGCTTGCTTATGGAAACAACATTGGTCTTACTGGCGCAATCCTCTGTACACTGCCATTAGATTTCTTTACTCCACCACTGTAGCTGTTGTGATCGGTAGCATGTTTTGGAACCTTGGCTCCAAAATTGACCAACAACAAGATCTTTTCAATGCCATGGGCTCCATGTATGCTGCTGTTCTTCTTATTGGCATTAAGAATGCTAATGCAGTGCAGCCAGTGGTTGCCGTTGAACGAACTGTCTTTTACAGGGAAAAAGCAGCCGGAATGTATTCAGCTTTGCCATATGCTTTTGCTCAGGTTGTAATTGAGCTCCCATATGTTCTAGCACAAGCTTTGGTATATGGCATCATAATTTATGCCATGATTGGTTTTGAGTGGACTGTGACTAAAGTTTTCTGGTACCTATTCTTCATGTACTTTACCTTCCTAACCTTCACCTACTATGGCATGATGTCTGTAGCAGTGACCCCAAACCAACACATTTCTTCTATAGTTTCCTCTGCCTTCTATGCAGTGTGGAATCTCTTCTCAGGATTCATAGTCCCAAGACCGAAAATCCCAGTGTGGTGGAGATGGTACAGTTGGGTTAATCCAGTAGCATGGAGTTTGTATGGATTGGTGGCTTCACAATATGGAGATATACACAAAAGCATGGAATCCAGTGACGGAAGAACAACAGTAGAAGGGTTTGTAAGAAGCTACTTTGGTTTTGAGCATGATTTTCTTGGAGTGGTTGCAGCTGTGATGGTTGCATTCCCAGTTGTCTTTGCATTGGTCTTTGCTATATCAGTGAAGATGTTCAATTTCCAAAGGCGTTAA 4368 0.4162 MEGGGSLRIGSSSIWRNSDAEIFSNSFEQENDEEALKWAAIQKLPTVARMRKALLTSPDGEANEIDVQKLGLQEKRALLERLVRTAEEDNERFLLKLKDRIDRVGIDLPTIEVRFENLNIEAEARVGTRALPTFTNFMVNIVEGLINSLHILPTMKQHLNILQNVSGKIKPGRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGKVTYNGHEMNEFVPQRTAAYVNQNDLHIGEMTVRETLAFSARVQGVGPRYDLLAELSRREKEASIKPDPDVDAYMKAVASEGQKANMITDYVLRILGLEVCADTVVGNAMLRGISGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVNSLKQYVHILKGTTVISLLQPAPETYNLFDDIILLSDSHIVYQGPREYVLEFFELMGFKCPERKGVADFLQEVTSRKDQEQYWAHKDQPYRFVTAKEFSEAHKSFHVGRSLREELDREFDKSKSHPAALTTKKYGVGKWELLKACLSREYLLMKRNSFVYTFKLFQLAALAIIAMTIFFRTEMHRDSVTHGGIYVGALFYGVVVTMFNGLAELSMVVSRLPVFYKQRDYLFFPSWVYALPAWILKFPLTFMEVGVWVFLTYYVIGFDPHVGRLFRQYLVLALVNQMASALFRLIAAVGREMTVALTLGSFTLAILFAMSGFVLSKDNIKKWWLWGFWISPMMYGQNAMVNNEFLAERWRHVLPNSTEPLGVEILKSRGFFTQSYWYWIGVGALIGYTLLFNLGYILALKYLNPFGKHRAVISDESQSNDQNGGSKKGNNVMKNTKHSFSQYSNKVRNGESTSGSTSPHSSSTRHEAVDAETNHNRKRGMVLPFEPHSITFDDVTYSVDMPVEMKNRGFVEDKLVLLKGVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTGEYVGGNITISGYKKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLSPEINDETRKMFIEEVMELVELKPLRHALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKQGGQEIYVGPLGHHSSHLISYFEEIQGVSKIKDGYNPATWMLEVSTLAKEMELGIDFAEVYKSSELYRRNKGLIKELSTPAPGSKDLYFPSQYSTSFFTQCMACLWKQHWSYWRNPLYTAIRFLYSTTVAVVIGSMFWNLGSKIDQQQDLFNAMGSMYAAVLLIGIKNANAVQPVVAVERTVFYREKAAGMYSALPYAFAQVVIELPYVLAQALVYGIIIYAMIGFEWTVTKVFWYLFFMYFTFLTFTYYGMMSVAVTPNQHISSIVSSAFYAVWNLFSGFIVPRPKIPVWWRWYSWVNPVAWSLYGLVASQYGDIHKSMESSDGRTTVEGFVRSYFGFEHDFLGVVAAVMVAFPVVFALVFAISVKMFNFQRR 1455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3906g00001 1455 MobiDBLite consensus disorder prediction 781 829 - -
Vium3906g00001 1455 Pfam ABC-transporter N-terminal 75 137 IPR029481 -
Vium3906g00001 1455 CDD ABCG_PDR_domain2 852 1090 IPR034003 -
Vium3906g00001 1455 FunFam ABC transporter G family member 34 149 453 - -
Vium3906g00001 1455 FunFam ABC transporter G family member 40 869 1099 - -
Vium3906g00001 1455 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 855 1108 IPR003439 GO:0005524
Vium3906g00001 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 868 1091 IPR027417 -
Vium3906g00001 1455 Coils Coil 69 92 - -
Vium3906g00001 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 419 IPR027417 -
Vium3906g00001 1455 CDD ABCG_PDR_domain1 161 401 IPR034001 -
Vium3906g00001 1455 Gene3D - 150 462 IPR027417 -
Vium3906g00001 1455 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 8 1455 - -
Vium3906g00001 1455 Pfam ABC-2 type transporter 377 471 IPR043926 GO:0140359
Vium3906g00001 1455 MobiDBLite consensus disorder prediction 779 842 - -
Vium3906g00001 1455 Pfam ABC transporter 883 1035 IPR003439 GO:0005524
Vium3906g00001 1455 Pfam ABC transporter 162 344 IPR003439 GO:0005524
Vium3906g00001 1455 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 146 419 IPR003439 GO:0005524
Vium3906g00001 1455 Gene3D - 857 1099 IPR027417 -
Vium3906g00001 1455 Pfam ABC-2 type transporter 1180 1394 IPR013525 GO:0016020|GO:0140359
Vium3906g00001 1455 Pfam ABC-2 type transporter 498 710 IPR013525 GO:0016020|GO:0140359
Vium3906g00001 1455 SMART AAA_5 171 396 IPR003593 GO:0016887
Vium3906g00001 1455 SMART AAA_5 892 1084 IPR003593 GO:0016887
Vium3906g00001 1455 Pfam Plant PDR ABC transporter associated 715 778 IPR013581 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3906g00001 Vium-Chr3906 14161 22124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3906g00001 867 1067 Calmodulin-binding Proteins AT2G36910 25.926 7.16e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3906g00001 K08711 - gmx:732607 2612.41