Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3903g00004 ATGGCGCCAAAACGAAAACCTTCTTCTCCAATCTCCATCGGTAACTGCGAGGTTACTGTCGAGGCCACTCGTTTCACCTGTAACTCCGACTCAAACGCCGTCGTAATCTCGCTTCCGCGAAGCGGAAAGGTCAAAGTGTCAGCTGCCGTTGTTAAAAACCATGAGAACGCTTCTGAGGATTTTAGATCCGGTGATAAAGAGCATGAGTTCGTGCTGGTTAATCCTAAAGATGCCGATTCTGTTAGTAAATCCTACCTTCAGGAAGTATTAGAAATGTACAGGACAGAGCTACCTGGAATGAATTATGCCGCAAATACTGGAAAACAATCCAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGAACCCTACTGGTAAAATCCACTCGTGTTGGAAATTCAGGAAAGGTTATAGCCGCAATCACATACCAATTCATCCCTGCAGATACAGAATTTGCAGAGGTCCCACTTGCAGCTGTCAATGCAATCCATCAACGAAAGGGTTTTGGTCATTTATTGGTTCTGGAGCTACGGAAAAGACTTCAAAGTGTTGGAATTCGTTCTATTTTATGCTGGGGAGACAAAGAATCAGAAGGGTTTTGGCTTAAACAGGGTTTTGTAGAAATAGCACAGGTGGATACGAAAGGAAGGGCCCGCAGGTTACCTGTAAAAGCTGATATTCAGAAATCATTATGCTTTCTTGGTGGTTCAACTCTCATGGTTTGCCACGTAATGAAAGAATGCTTAGCCGATGAGGATAACACTACGAAGTGTCTCCCTTCACAGTTTCATCAGAATTCCTTTACACCTGCCATTGCTGAAGATGAGCAGCTGAAGATTTCAGGATCTGACAGTCGTAACCCTAAGAAATTCTGTAGTAGTATTGCTCCATTTGCCCAAGTAAACGATGATAGACAGGCCACTGGTTCGGAAAGTTCACAGCATGGAGTTGGTGCTAATGTGAATTATTGTTCTCAATCTACAAAAGGTGCAAAGAGGACCTGGGAAGCCTCTTTATCCTCATTGAAGTCAAAAAGAGTGAAGGGGAGCCAGCTGGTTGACAATCAATCAGGTTCTAGCTGCGGTTTTATCTTAGAGACTGATGAGGTCAATCCCTGTTTTGTAGAGGCCCTCTACGATCCTTCGATTACAGATGGTTCTGAAAAATGTGTCGATAATTATTTACATTTAGAAGCTCCTATCAACATGGAACCTCCGTCTACTAAACAATGCTTTAGAATTATGTTGATGAATATCGCTGATGATGCTAAGAAAACACAGCTTACAAAGGTGATTGAAGACCTTGGTGGAACTGTATCGACTTGTGGAAGTATGACCACACACATTGTCACAGGAAAAGTGAGAAAAACTCTGAATTTCTGTACCGCCCTTTGTTCAGGTGCTTGGGTGATCTCATCAAGTTGGTTAAAAGAAAGTTTTCGTGAAGGCAGATTTGTTGATGAATTGCCTCACATACTGAACGATACGGATTATTCGCTGAAGTACAAATGTGATTTAAAAAGTGCAGTTTTACGGGCAAAAGCTAGCTCTCATACATTGTTCAAGGGATATAATATATGTATTGCAGCTCATGTTCAAACTCCCGCGAAAATATTGTCTGCAATTGTCATGTCCGCAGGTGGTAATGTGATTAGTAGAGTGGAGAAAGTAAAAGAAACATCAACAACAATCTTTGTGACGGGCGAAGAAGACACGGAAGAAGCAATGGTGGCCGCAAAGAAAGGGATCCGAACTTTCAGTTGCGATTGGTTTATGAACTGTGTCATGAGACAAGAACTTGACTTGGAAGCCCCCCAGTTTGCTGAGACCTTATAA 1839 0.4225 MAPKRKPSSPISIGNCEVTVEATRFTCNSDSNAVVISLPRSGKVKVSAAVVKNHENASEDFRSGDKEHEFVLVNPKDADSVSKSYLQEVLEMYRTELPGMNYAANTGKQSKFLERCVTNGKYRTLLVKSTRVGNSGKVIAAITYQFIPADTEFAEVPLAAVNAIHQRKGFGHLLVLELRKRLQSVGIRSILCWGDKESEGFWLKQGFVEIAQVDTKGRARRLPVKADIQKSLCFLGGSTLMVCHVMKECLADEDNTTKCLPSQFHQNSFTPAIAEDEQLKISGSDSRNPKKFCSSIAPFAQVNDDRQATGSESSQHGVGANVNYCSQSTKGAKRTWEASLSSLKSKRVKGSQLVDNQSGSSCGFILETDEVNPCFVEALYDPSITDGSEKCVDNYLHLEAPINMEPPSTKQCFRIMLMNIADDAKKTQLTKVIEDLGGTVSTCGSMTTHIVTGKVRKTLNFCTALCSGAWVISSSWLKESFREGRFVDELPHILNDTDYSLKYKCDLKSAVLRAKASSHTLFKGYNICIAAHVQTPAKILSAIVMSAGGNVISRVEKVKETSTTIFVTGEEDTEEAMVAAKKGIRTFSCDWFMNCVMRQELDLEAPQFAETL 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3903g00004 612 Gene3D BRCT domain 519 611 IPR036420 -
Vium3903g00004 612 Gene3D - 66 229 - -
Vium3903g00004 612 Gene3D BRCT domain 403 518 IPR036420 -
Vium3903g00004 612 CDD BRCT_PAXIP1_rpt6_like 521 602 - -
Vium3903g00004 612 SUPERFAMILY BRCT domain 414 496 IPR036420 -
Vium3903g00004 612 Pfam BRCA1 C Terminus (BRCT) domain 519 596 IPR001357 -
Vium3903g00004 612 Pfam BRCA1 C Terminus (BRCT) domain 421 481 IPR001357 -
Vium3903g00004 612 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 71 214 IPR016181 -
Vium3903g00004 612 SMART BRCT_7 519 599 IPR001357 -
Vium3903g00004 612 SMART BRCT_7 405 484 IPR001357 -
Vium3903g00004 612 Pfam Acetyltransferase (GNAT) family 134 207 IPR000182 GO:0016747
Vium3903g00004 612 ProSiteProfiles BRCT domain profile. 415 494 IPR001357 -
Vium3903g00004 612 CDD NAT_SF 134 193 - -
Vium3903g00004 612 SUPERFAMILY BRCT domain 517 602 IPR036420 -
Vium3903g00004 612 ProSiteProfiles BRCT domain profile. 517 601 IPR001357 -
Vium3903g00004 612 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 65 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3903g00004 Vium-Chr3903 33154 39384 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vium3903g00004 BRCT 6.2e-05 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3903g00004 - - pvu:PHAVU_001G128100g 1071.61