Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3903g00003 ATGGCGCCAAAACGAAAACCTTCTTCTCCAATCTCCATCGGTAACTGCGAGGTTACTGTCGAGGCCACTCGTTTCACCTGTAACTCCGACTCAAACGCCGTCGTAATCTCGCTTCCGCGAAGCGGAAAGGTCAAAGTGTCAGCTGCCGTTGTTAAAAACCATGAGAACGCTTCTGAGGATTTTAGATCCGGTGATAAAGAGCATGAGTTCGTGCTGGTTAATCCTAAAGATGCCGATTCTGTTAGTAAATCCTACCTTCAGGAAGTATTAGAAATGTACAGGACAGAGCTACCTGGAATGAATTATGCCGCAAATACTGGAAAACAATCCAAGTTTCTTGAGAGATGTGTGACTAATGGCAGGAAATATCGAACCCTACTGGTAAAATCCACTCGTGTTGGAAATTCAGGAAAGGTTATAGCCGCAATCACATACCAATTCATCCCTGCAGATACAGAATTTGCAGAGGTCCCACTTGCAGCTGTCAATGCAATCCATCAACGAAAGGGTTTTGGTCATTTATTGGTTCTGGAGCTACGGAAAAGACTTCAAAGTGTTGGAATTCGTTCTATTTTATGCTGGGGAGACAAAGAATCAGAAGGGTTTTGGCTTAAACAGGGTTTTGTAGAAATAGCACAGGTGGATACGAAAGGAAGGGCCCGCAGGTTACCTGTAAAAGCTGATATTCAGAAATCATTATGCTTTCTTGGTGGTTCAACTCTCATGGTTTGCCACGTAATGAAAGAATGCTTAGCCGATGAGGATAACACTACGAAGTGTCTCCCTTCACAGTTTCATCAGAATTCCTTTACACCTGCCATTGCTGAAGATGAGCAGCTGAAGATTTCAGGATCTGACAGTCGTAACCCTAAGAAATTCTGTAGTAGTATTGCTCCATTTGCCCAAGTAAACGATGATAGACAGGCCACTGGTTCGGAAAGTTCACAGCATGGAGTTGGTGCTAATGTGAATTATTGTTCTCAATCTACAAAAGGTGCAAAGAGGACCTGGGAAGCCTCTTTATCCTCATTGAAGTCAAAAAGAGTGAAGGGGAGCCAGCTGGTTGACAATCAATCAGGTTCTAGCTGCGGTTTTATCTTAGAGACTGATGAGGTCAATCCCTGTTTTGTAGAGGCCCTCTACGATCCTTCGATTACAGATGGTTCTGAAAAATGTGTCGATAATTATTTACATTTAGAAGCTCCTATCAACATGGAACCTCCGTCTACTAAACAATGCTTTAGAATTATGTTGATGAATATCGCTGATGATGCTAAGAAAACACAGCTTACAAAGGTGATTGAAGACCTTGGTGGAACTGTATCGACTTGTGGAAGTATGACCACACACATTGTCACAGGAAAAGTGAGAAAAACTCTGAATTTCTGTACCGCCCTTTGTTCAGGTGCTTGGGTGATCTCATCAAGTTGGTTAAAAGAAAGTTTTCGTGAAGGCAGATTTGTTGATGAATTGCCTCACATACTGAACGATACGGATTATTCGCTGAAGTACAAATGTGATTTAAAAAGTGCAGTTTTACGGGCAAAAGCTAGCTCTCATACATTGTTCAAGGGATATAATATATGTATTGCAGCTCATGTTCAAACTCCCGCGAAAATATTGTCTGCAATTGTCATGTCCGCAGGTGGTAATGTGATTAGTAGAGTGGAGAAAGTAAAAGAAACATCAACAACAATCTTTGTGACGGGCGAAGAAGACACGGAAGAAGCAATGGTGGCCGCAAAGAAAGGGATCCGAACTTTCAGTTGCGATTGGTTTATGAACTGTGTCATGAGACAAGAACTTGACTTGGAAGCCCCCCAGTTTGCTGAGACCTTATAA 1842 0.4229 MAPKRKPSSPISIGNCEVTVEATRFTCNSDSNAVVISLPRSGKVKVSAAVVKNHENASEDFRSGDKEHEFVLVNPKDADSVSKSYLQEVLEMYRTELPGMNYAANTGKQSKFLERCVTNGRKYRTLLVKSTRVGNSGKVIAAITYQFIPADTEFAEVPLAAVNAIHQRKGFGHLLVLELRKRLQSVGIRSILCWGDKESEGFWLKQGFVEIAQVDTKGRARRLPVKADIQKSLCFLGGSTLMVCHVMKECLADEDNTTKCLPSQFHQNSFTPAIAEDEQLKISGSDSRNPKKFCSSIAPFAQVNDDRQATGSESSQHGVGANVNYCSQSTKGAKRTWEASLSSLKSKRVKGSQLVDNQSGSSCGFILETDEVNPCFVEALYDPSITDGSEKCVDNYLHLEAPINMEPPSTKQCFRIMLMNIADDAKKTQLTKVIEDLGGTVSTCGSMTTHIVTGKVRKTLNFCTALCSGAWVISSSWLKESFREGRFVDELPHILNDTDYSLKYKCDLKSAVLRAKASSHTLFKGYNICIAAHVQTPAKILSAIVMSAGGNVISRVEKVKETSTTIFVTGEEDTEEAMVAAKKGIRTFSCDWFMNCVMRQELDLEAPQFAETL 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3903g00003 613 ProSiteProfiles BRCT domain profile. 518 602 IPR001357 -
Vium3903g00003 613 CDD BRCT_PAXIP1_rpt6_like 522 603 - -
Vium3903g00003 613 Gene3D - 66 230 - -
Vium3903g00003 613 SUPERFAMILY BRCT domain 415 497 IPR036420 -
Vium3903g00003 613 SUPERFAMILY BRCT domain 518 603 IPR036420 -
Vium3903g00003 613 CDD NAT_SF 135 194 - -
Vium3903g00003 613 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 65 232 - -
Vium3903g00003 613 ProSiteProfiles BRCT domain profile. 416 495 IPR001357 -
Vium3903g00003 613 SMART BRCT_7 520 600 IPR001357 -
Vium3903g00003 613 SMART BRCT_7 406 485 IPR001357 -
Vium3903g00003 613 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 72 215 IPR016181 -
Vium3903g00003 613 Gene3D BRCT domain 520 612 IPR036420 -
Vium3903g00003 613 Gene3D BRCT domain 404 519 IPR036420 -
Vium3903g00003 613 Pfam BRCA1 C Terminus (BRCT) domain 422 482 IPR001357 -
Vium3903g00003 613 Pfam BRCA1 C Terminus (BRCT) domain 520 597 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3903g00003 Vium-Chr3903 33153 39384 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vium3903g00003 BRCT 6.3e-05 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3903g00003 - - pvu:PHAVU_001G128100g 1066.99