Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3902g00064 ATGAGTAAGATCAGCAACTTGAGTTCTGTAAGCAGTTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAATTGTGCGGATCCAAGCAGTGTCCCGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTAGGCTTGCCAGCAGGAGTGAAGTTTGATCCCACAGACCAAGAACTGATAGAACATCTTGAAGCCAAAGTGGAGGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCAACCATTGAAGGAGAAGACGGAATCTGTTATACCCATCCAGAGAAACTTCCAGATTTTTAG 312 0.4519 MSKISNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPDF 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3902g00064 103 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 9 101 IPR044799 GO:0003700
Vium3902g00064 103 Pfam No apical meristem (NAM) protein 48 102 IPR003441 GO:0003677|GO:0006355
Vium3902g00064 103 ProSiteProfiles NAC domain profile. 47 103 IPR003441 GO:0003677|GO:0006355
Vium3902g00064 103 SUPERFAMILY NAC domain 43 102 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3902g00064 Vium-Chr3902 445598 450240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3902g00064 11 101 NAC Transcription Factor Family AT5G56620 73.737 4.53e-43 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3902g00064 - - vum:124836076 206.453