Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3902g00062 ATGAGTAAGATCAGCAACTTGAGTTCTGTAAGCAGTTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAATTGTGCGGATCCAAGCAGTGTCCCGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTAGGCTTGCCAGCAGGAGTGAAGTTTGATCCCACAGACCAAGAACTGATAGAACATCTTGAAGCCAAAGTGGAGGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCAACCATTGAAGGAGAAGACGGAATCTGTTATACCCATCCAGAGAAACTTCCAGGAGTAACAAGAGATGGATTGAGCAGGCACTTCTTCCATAGACCCTCAAAGGCTTACACAACTGGGACAAGAAAGAGGAGAAAGATTCAAAACGAATGTGACTTGCAAGGTGGAGAAACCCGGTGGCACAAGACTGGTAAGACCAGGCCAGTGATGGTGAATGGAAAACAAAAGGGTTGCAAGAAAATTCTTGTCCTCTACACCAACTTTGGAAAGAACAGAAAGCCAGAGAAAACCAACTGGGTGATGCACCAATACCATTTGGGGCAGCATGAAGAAGAGAAAGAGGGAGAGCTTGTGGTGTCCAAGATATTCTATCAGACACAGCCAAGACAGTGCAACTGGTCAGACAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAACCTAACAACAGTAGCAGAAGGGACAGTGGAAGTGGAAGTTGTTCTTCCAAAGAAATTGCTACTCACAGAGATGAAATGTCTGCTGTTGTTGGTGTCCCTCCAATCACAACTTTCACTCATCACCCTTTGGACATTCACCATCTAAAACCTGATCACTTTAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGGTTGGAATGGGAGAGGTTTCAACAGCAAGGGAAGTGGTGCAAGCATCAGGTTCGTGTGAAGAAGTGCATGAACGACAGAGAGCACAGCATGTAGTTCATCATCATCAACAACAACAACAACAACAACAACATGCTCATCATCAGATTTCAAACTCAGCTTTTCATATCAGTAGGCCATCACATCCCATCTCCACCATTATTTCTCCACCTCCCCTCCACCATACTTCCATCATTCTCGATGACAACTCTTACCATGTCTCTAGAATAATGCTCCAAAATGAAAATTTTCAGCAACAACAGCAACAACATCATCATAAGCTTGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGTTGCACTTCAACTGAAATCAAAGAGGAGTCATCCATGACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1356 0.4484 MSKISNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNNSSRRDSGSGSCSSKEIATHRDEMSAVVGVPPITTFTHHPLDIHHLKPDHFSFIPFRKSFDEVGMGEVSTAREVVQASGSCEEVHERQRAQHVVHHHQQQQQQQQHAHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNSYHVSRIMLQNENFQQQQQQHHHKLGGRSASGLEELIMGCTSTEIKEESSMTNPQEAEWLKYSSYWPDPDNPDHHG 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3902g00062 451 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Vium3902g00062 451 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Vium3902g00062 451 FunFam NAC domain-containing protein 73 56 212 - -
Vium3902g00062 451 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Vium3902g00062 451 MobiDBLite consensus disorder prediction 216 246 - -
Vium3902g00062 451 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Vium3902g00062 451 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 10 341 IPR044799 GO:0003700
Vium3902g00062 451 MobiDBLite consensus disorder prediction 216 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3902g00062 Vium-Chr3902 440824 445938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3902g00062 11 448 NAC Transcription Factor Family AT5G56620 53.092 1.56e-140 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium3902g00062 NAM 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3902g00062 - - gmx:100795246 793.112