LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3902g00059	ATGGAGAATAGCTGCATTCTAGCCTTTCTCATCTTCATTCTACATTCAAGTACAACGAAAGCTGTCTTCAGTGTTGGTGGTGGTGTTGGTGTAGGTGTAGGTGTAGGTGTAGGCGTTGGTGTTGGTGTTGGCAATGGAAATGGGGGTGGCAATGGTGGAATGGTTTGGGTTGGAGGAGGGATTAACAGCCCAGAGCCTCCTGGATATTCAGTGCCAAAGCCTGAAGGAGCTTACACAGCTCTCCAAGCTTGGAAATCTGCAATCACTGAGGACCCTCTTAATGTTTTAGAAAGTTGGGTTGGTCCAAATGTGTGTTCTTACAAAGGAGTCTTCTGTGCAAATCCTCAAGATGAAATGGTTGCATCAGCTTTCCCAGTTGTTGCAGGCATAGATCTCAACCATGCAAATCTGAAAGGAACTCTCGTCAAAGAGCTGTCTCTACTCAGTGATTTGTCTCTTCTCCACCTCAACACGAACAGATTCACGGGTTCTGTTCCCGATACATTCAGAGAGCTGGTGTTTCTGGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTCCCTTATGCTACTTTGTACATGCCAGGCCTCATCTACTTAGACCTAAGATTCAACTACTTCTCTGGGGCCCTTCCTGAGGAACTTTTCAGCAAGAATCTGGATGCAATATTTCTCAATAACAACCAGTTTGAAGGTGAAATTCCCCAAAACTTGGGTAGCTCCCCAGCCTCGGTGATAAACCTGGCCAACAACAAGTTGAGTGGAAACATCCCAGCAAGTTTGGGCTTCATGGGGTCTAAAATAAAGGAGATTCTGTTCCTCAATAACCAGTTAACTGGTTGCATCCCTGAAGGAGTGGGGCTATTCACAGAGATGCAAGTTTTGGATGTGAGCTTCAACTCACTTATGGGTCATTTGCCAGACACGCTGTCATGCCTTCAAGACATTGAAGTTCTGAACTTGGCCCATAACAAGCTCTCTGGGGAGTTATCAGACATAGTGTGCTCTTTGAGAAGTCTTGCAAATCTAACTGTTGCTTACAATTTCTTTTCGGGGTTCAGCCAGCAATGCTCAAGGCTTTTCTTTAGGAATGTGGGTTTTGATTTCTCCCTAAACTGCATTCCTGGGAGGGACATGCAGAGACCTCAACCTGAATGCTCTGTCATCCCAGGTGGTAGCCTTAGTTGTCTCAGAATCCCCACACCAAGGCCTCTTGTTTGTGGTTCAATGGCTGTAAGTAACTCTAAGCACATTGATCCTTGA	1269	0.4563	MENSCILAFLIFILHSSTTKAVFSVGGGVGVGVGVGVGVGVGVGNGNGGGNGGMVWVGGGINSPEPPGYSVPKPEGAYTALQAWKSAITEDPLNVLESWVGPNVCSYKGVFCANPQDEMVASAFPVVAGIDLNHANLKGTLVKELSLLSDLSLLHLNTNRFTGSVPDTFRELVFLEELDLSNNQLSGPFPYATLYMPGLIYLDLRFNYFSGALPEELFSKNLDAIFLNNNQFEGEIPQNLGSSPASVINLANNKLSGNIPASLGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSFNSLMGHLPDTLSCLQDIEVLNLAHNKLSGELSDIVCSLRSLANLTVAYNFFSGFSQQCSRLFFRNVGFDFSLNCIPGRDMQRPQPECSVIPGGSLSCLRIPTPRPLVCGSMAVSNSKHIDP	422

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3902g00059	422	PANTHER	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED	68	402	-	-
	Vium3902g00059	422	Pfam	Leucine rich repeat N-terminal domain	78	112	IPR013210	-
	Vium3902g00059	422	Gene3D	Ribonuclease Inhibitor	244	366	IPR032675	-
	Vium3902g00059	422	Gene3D	Ribonuclease Inhibitor	77	243	IPR032675	-
	Vium3902g00059	422	SUPERFAMILY	L domain-like	77	361	-	-
	Vium3902g00059	422	FunFam	Leucine-rich repeat extensin-like protein 1	78	242	-	-
	Vium3902g00059	422	PRINTS	Leucine-rich repeat signature	315	328	-	-
	Vium3902g00059	422	PRINTS	Leucine-rich repeat signature	175	188	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3902g00059	Vium-Chr3902	429547	431240	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3902g00059	69	400	Leucine-rich Repeat extension Gene Families	AT3G24480	48.817	7.44e-105	317

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3902g00059	-		-	gmx:100775544	719.924