Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3902g00044 ATGGGAAACAAAATCGCGCGCACGACGCAGGTTTCGGCGTCGGAGTACTACCTGCATGACCTGCCGTCGACGTACAATCTGGTTCTGAAGGAGGTGTTAGGTCGTGGCCGTTTCTTCAAGTCTATTCAGTGCAAACACGACGAGGGTTTGGTACTCGTCAAGGTCTATTTCAAGCGCGGCGATTTCCTCGATCTCTCCGACTACGAACGCCGTCTCTCTCAGATCAAACAAATCTTCACCTCCATCGATCACCCTCACGTTTGGCCGTTTCAGTTTTGGCAAGAAACGGATAAAGCCGCCTACCTTTTGAGGCAGTATTTCTTTCATAATCTGCATGATAGGTTAAGCACTCGACCTTTTCTTTGTCTTGTTGAGAAGAAATGGTTGGCTTTTCAGTTGCTTGTAGCTGTAAACCAGTGCCACGAGAATGGAGTGTGTCACGGTGATATCAAGTGTGAGAATGTGCTGATTACCTCCTCCAATTGGCTTTACCTTGCTGACTTTGCCTCTTTCAAACCCACATACATTCCATATGATGACCCATCTGATTTCTCTTTTTTCTTTGACACTGGTGGACGAAGACTATGTTATCTTGCACCTGAGAGATTTTATGAACATGGAGGGGAGATGCAGGTGGCACAAGATACCCCCTTAAAACCCTATATGGATATATTTGCTGTTGGGTGTGTAATAGCTGAACTTTTCCTTGAGGGGCAGCCACTATTTGAACTGTCTCAACTTCTTGCTTATCGCAGAGGCCAATATGATCCAAGTCAACACCTTGAAAAAATACCAGATATTGGGATCCGTAAAATGATATTGCACATGATCCAGTTAGAACCAGAGTCCCGATTTTCTGCTGAAAGATATCTGAAGGAATATGCTGCAGTTGTTTTTCCGATTTATTTTTCACCATTTCTTCATGATTTTTACCGTTGCTGGAGTCCTCTTCATTCCGACATGAGGGTTTTACTATGCCAAAGTGCTTTTCCGGAGATACTTAAACAAATGATGAACAATCAGTCATATGATGATGTAGCTGCTAATTCTGGGGAACTTTTGGAAGAGATGGTTGCTAAAGGAAGTGTGAGTTTCGTGAAGGATTCAATGAGGAAGAGAGATGACATAGGCAAAGGCTTAGTTCATGAGAACTATGAACTTCTTGGTGGTATTAATAGCCTACTGAGGGATGCTAAAAGAAATAATAGTCCATCGGATGTAGCAGGAAATGCACATAATTCAACCTTCCCTGAAAATCTAACAAATCTGCAAACTGGTAAACTGCTTCAAACTATCTCCAATGCTTTTCGAGGAAATGATCATCCATTTTTGAAAAGTATTGCCATGGATGATTTGAATTCATTGATGTCTGAGTATGATAGTCAATCAGATACATTTGGAATTCCTTTTCTACCTTTACCAAAGGATAGTATGAGATGTGAAGGCATGGTGTTGATAACTTCTTTGCTGTGCTCTTGCATCCGCAATATCAAGTTGCCTCACCTGAGGAGGGCAGCTGTGCTCTTGTTGAAGGCGTCTGCCCTATATGTTGATGATGAAGATCGTTTGCAGCGTGTTATCCCATATGTGATTGTAATGCTTTCAGATTCAGCAGCAATTGTCCGTTGTGCTGCTTTGGAGACTTTGTGTGACATTCTTCCCTTAGTGAGGGATTTTCCTCCCAGTGATGCGAAGATATTTCCTGAGTATATTCTTCCAATGCTTTCTATGCTTCCTGATGATCCTGAGGAAAGTGTGAGGATATGCTATGCCAGCAATATAGCTAAACTGGCACTGACTGCTTATGGATTCCTGATACACTCAGTAAGCTTGAGTGAGGCAGGTGTCCTTGATGAATTGAGTTTGTCACAGAAACCGTTGACATCATCCAATCAGACTTCTGGAAGAATGAAAAGGATAAATGGCGAAGTTCAACTTCTGCAGCTGAGGAAATCCATTGCGGAGGTTGTCCAAGAACTTGTTATGGGTCCTAAGCAAACCCCAAATATAAGGAGAGCACTTCTTCAGGATATTGGCAAACTGTGCTACTTCTTTGGTGTGAGACAGAGTAATGACTCTCTTTTACCCATTCTTCCTGCTTTCTTAAATGATCGGGATGAGCAATTAAGGACAGTATTCTATGAAAAAATAGTTTATGTCTGCTTTTTTGTGGGGCAAAGAAGTGTAGAAGAATATTTATTACCTTATATTGAGCAAGCTTTAAGTGACATGACGGAATCAGTCATCGTTAAAGCTGTAGAATGTATGTCTATTCTATGTAAAAATGGTTTCTTCCGTAAGAGGACATTACTTCAAATGATAGAGCGTGGCTTTCCTTTATTGTGTTATCCTAGTGAATGGGTACGGAGATCGATTGTCTCTTTTATTGCTGCTAGCAGTGAGTGCTTGGGTGCAGTAGATTCTTATGTTTTCCTTGCTCCTGTTATACGGCCTTTCCTCCGCAGGCAGCCTGTGTCTCTTGCTTCTGAGAGGGCTCTGCTTTCATGTTTAAAACCTCCCGTCTCAAGACAGGTTTTCTACGAAGTCTTGGAGAACTCCAGGAGTTCGGACATGTTAGAAAGACAAAGGAAAATATGGTATAGTTCTTCACAGTCTAAACTATGGGAAATGGATTTACTGAAAAAAGGAATTGAAGAGTTGGACTCATTAAACAACTGGACTGACAAGCAACAAGGTCCTGGGGTTCAACAAACTGTCAGCACTGGCTTCCAACAGCCAGGGATAATTGATTGTGACAAAGCTGAGGCAAAATTGAGAGATATGGGAGCCTTTGTGCATAATGATAGCAATGCTGCAGGACATCGTGATACTCAAGGCATGGAGAAGTTACAGTTTTCAGGATTTATGTCACCAAATTTTAGTGGTGTGAACAGTTTGACTTATGAAAAGCCGTCAGAAGGCATACCTCTGTATTCCTTCAGTGTGGACCGGCGGGGAATGGGAATTCTGCCTGCTGCATCTGATCCTCCATTGCCAATGAGTTCTCTGGGTTTTAGTTCATCTGCAATGCCCTGGGTTAATCCACTAAGCACGTCCTTTAATTTGGCTAGTTCAGTTCCAGCACCAAAGCTTTTTTCAGGTTCGTTTAGCATCAGCAATGGCTCTAAACAGTTCCATCGAGTGGTACATGAACCAGATGCCAGGGAAAATGAGACTGCCTATATTAATAGCACGTTTCAAGATTTGGGATCATCTGCTAATGTAGGCACTTCAATTGCTATGGAAGATGCAACTGCCCAAACTGATCTATCAGGATTTCCATCCCATGCTCGAGTTTCCATTCCTGATTCTGGTTGGAGGCCCCGTGGGGTGTTGGTTGCACACCTCCAGGAGCACCGATCAGCCGTCAATGACATTGCTATATCTGCTGACCATAGTTTCTTTGTGAGTGCATCTGATGATTCTACAGTCAAGATTTGGGATTCTAGAAAGCTAGAAAAAGACATTTCATTCAGGTCTAAGCTAACTTATCACCTGGAGGGAAGCCGAGTGTTGTGTGCAGCAATGCTTCCAGGTTCTGCACAAGTTATAATTGGAGCGTCTGATGGATTTATTCATATGTTTTCTATTGATCATATGTCTAGAGGTCTAGGAAACGTTGTCGAGAAATATTCTGACATTGCTGATATCACAAAGAAGGATATCAAAGAAGGTGCCATACTCAACCTATTGAATTGCCCTGTGGATAATTATACGATTATGTATAGCACACAGAACTGTGGCATTCATCTGTGGGATACTAGGTCAAATTCCAATGCCTGGACTCTTAGAGCTGCTCCTGAGGAGGGCTATGCTTCGTCTCTGGCATCAGGGCCTTGTGGTAATTGGTTTGTATCAGGGTCATCCCGGGGGGTTATTACACTTTGGGACCTGAGGTTTCTTATACCTGTTAATTCTTGGCAGTATTCTCTTGCTTGCCCTATAGAAAAGATGTGTCTCTTTCTTCCTCCTTCAAATGCTTCTTTGTCTTCAGCTGCCAGGCCCCTTGTTTATGTGGCTGCAGGTTGCAATGAAGTTTCTCTTTGGAATGCAGAGAATGGTAGCTGCCACCAGGTCCTAAGGATGGTCAATTACGAGAGCGATGCTGAAATGTCTGATCTGCCTTGGGCATTGGCTAGACCTTCAAGTAAGCCAGCTTCTCAATCAGATCCAAGACGGAATGTTCATCGCAAGTATGGAGTTGATGAGCTAAACGAACCACCTCCTCGCCTTCCTGGTATTCGCTCATTACTTCCCTTGCCTGGGGGTGATTTGTTGACTGGAGGCACTGATTTAAAGATACGTCGGTGGGATCATTACAGTCCTGACAGAAGTTACTGTATTTGTGGACCAAGCTTAAAAGGAATAGGAAATGATGATTTTTATGAAACAAAATCTAGTTTCGGGGTGCAAGTTGTACAGGAGACAAAAAGACGTCCTCTTACAATCAAGCTGACAGCAAAGGCAATTCTTGCGGCTGCTGCCACTGATTCTGCTGGTTGCCATCATGACTCTATTGTTTCTTTGGCTTCTATTAAGTTAAACCAGAGACTGTTACTTTCAAGTGGTAGAGATGGGGCCATCAAGGTTTGGAAGTAA 4599 0.4286 MGNKIARTTQVSASEYYLHDLPSTYNLVLKEVLGRGRFFKSIQCKHDEGLVLVKVYFKRGDFLDLSDYERRLSQIKQIFTSIDHPHVWPFQFWQETDKAAYLLRQYFFHNLHDRLSTRPFLCLVEKKWLAFQLLVAVNQCHENGVCHGDIKCENVLITSSNWLYLADFASFKPTYIPYDDPSDFSFFFDTGGRRLCYLAPERFYEHGGEMQVAQDTPLKPYMDIFAVGCVIAELFLEGQPLFELSQLLAYRRGQYDPSQHLEKIPDIGIRKMILHMIQLEPESRFSAERYLKEYAAVVFPIYFSPFLHDFYRCWSPLHSDMRVLLCQSAFPEILKQMMNNQSYDDVAANSGELLEEMVAKGSVSFVKDSMRKRDDIGKGLVHENYELLGGINSLLRDAKRNNSPSDVAGNAHNSTFPENLTNLQTGKLLQTISNAFRGNDHPFLKSIAMDDLNSLMSEYDSQSDTFGIPFLPLPKDSMRCEGMVLITSLLCSCIRNIKLPHLRRAAVLLLKASALYVDDEDRLQRVIPYVIVMLSDSAAIVRCAALETLCDILPLVRDFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLIHSVSLSEAGVLDELSLSQKPLTSSNQTSGRMKRINGEVQLLQLRKSIAEVVQELVMGPKQTPNIRRALLQDIGKLCYFFGVRQSNDSLLPILPAFLNDRDEQLRTVFYEKIVYVCFFVGQRSVEEYLLPYIEQALSDMTESVIVKAVECMSILCKNGFFRKRTLLQMIERGFPLLCYPSEWVRRSIVSFIAASSECLGAVDSYVFLAPVIRPFLRRQPVSLASERALLSCLKPPVSRQVFYEVLENSRSSDMLERQRKIWYSSSQSKLWEMDLLKKGIEELDSLNNWTDKQQGPGVQQTVSTGFQQPGIIDCDKAEAKLRDMGAFVHNDSNAAGHRDTQGMEKLQFSGFMSPNFSGVNSLTYEKPSEGIPLYSFSVDRRGMGILPAASDPPLPMSSLGFSSSAMPWVNPLSTSFNLASSVPAPKLFSGSFSISNGSKQFHRVVHEPDARENETAYINSTFQDLGSSANVGTSIAMEDATAQTDLSGFPSHARVSIPDSGWRPRGVLVAHLQEHRSAVNDIAISADHSFFVSASDDSTVKIWDSRKLEKDISFRSKLTYHLEGSRVLCAAMLPGSAQVIIGASDGFIHMFSIDHMSRGLGNVVEKYSDIADITKKDIKEGAILNLLNCPVDNYTIMYSTQNCGIHLWDTRSNSNAWTLRAAPEEGYASSLASGPCGNWFVSGSSRGVITLWDLRFLIPVNSWQYSLACPIEKMCLFLPPSNASLSSAARPLVYVAAGCNEVSLWNAENGSCHQVLRMVNYESDAEMSDLPWALARPSSKPASQSDPRRNVHRKYGVDELNEPPPRLPGIRSLLPLPGGDLLTGGTDLKIRRWDHYSPDRSYCICGPSLKGIGNDDFYETKSSFGVQVVQETKRRPLTIKLTAKAILAAAATDSAGCHHDSIVSLASIKLNQRLLLSSGRDGAIKVWK 1532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3902g00044 1532 Pfam Protein kinase domain 29 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3902g00044 1532 FunFam phosphoinositide 3-kinase regulatory subunit 4-like 472 611 - -
Vium3902g00044 1532 CDD STKc_Vps15 16 303 - -
Vium3902g00044 1532 Pfam HEAT repeat 526 554 IPR000357 GO:0005515
Vium3902g00044 1532 ProSiteProfiles HEAT repeat profile. 694 732 IPR021133 -
Vium3902g00044 1532 FunFam Phosphoinositide 3-kinase regulatory subunit 4 1091 1157 - -
Vium3902g00044 1532 PANTHER PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 1 1532 IPR045162 GO:0004674|GO:0016236|GO:0045324
Vium3902g00044 1532 Gene3D - 1051 1212 IPR015943 GO:0005515
Vium3902g00044 1532 SMART WD40_4 1404 1438 IPR001680 GO:0005515
Vium3902g00044 1532 SMART WD40_4 1109 1148 IPR001680 GO:0005515
Vium3902g00044 1532 SMART WD40_4 1492 1532 IPR001680 GO:0005515
Vium3902g00044 1532 SMART WD40_4 1256 1297 IPR001680 GO:0005515
Vium3902g00044 1532 SMART WD40_4 1157 1196 IPR001680 GO:0005515
Vium3902g00044 1532 FunFam Protein kinase family protein / WD-40 repeat family protein 622 832 - -
Vium3902g00044 1532 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1116 1148 - -
Vium3902g00044 1532 SUPERFAMILY ARM repeat 417 821 IPR016024 -
Vium3902g00044 1532 Pfam WD domain, G-beta repeat 1112 1148 IPR001680 GO:0005515
Vium3902g00044 1532 SUPERFAMILY Protein kinase-like (PK-like) 25 292 IPR011009 -
Vium3902g00044 1532 SMART serkin_6 27 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3902g00044 1532 Gene3D - 439 610 IPR011989 -
Vium3902g00044 1532 ProSiteProfiles Trp-Asp (WD) repeats profile. 1503 1532 IPR001680 GO:0005515
Vium3902g00044 1532 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1500 1532 - -
Vium3902g00044 1532 SUPERFAMILY WD40 repeat-like 1113 1530 IPR036322 GO:0005515
Vium3902g00044 1532 Gene3D Transferase(Phosphotransferase) domain 1 22 369 - -
Vium3902g00044 1532 FunFam Protein kinase family protein / WD-40 repeat family protein 24 348 - -
Vium3902g00044 1532 ProSiteProfiles Trp-Asp (WD) repeats profile. 1116 1148 IPR001680 GO:0005515
Vium3902g00044 1532 Gene3D - 611 838 IPR011989 -
Vium3902g00044 1532 ProSiteProfiles Protein kinase domain profile. 27 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3902g00044 1532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Vium3902g00044 1532 Gene3D - 1221 1532 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3902g00044 Vium-Chr3902 323254 332557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3902g00044 23 252 AGC Kinase Gene Family AT5G04510 21.519 6.01e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_Pl-Tthe Vium3902g00044 Pkinase 3.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3902g00044 K08333 - gmx:100818467 2835.05