Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3902g00042 ATGTCAAACTTGCATTACTTGTTCATCTTTTTAGCAGTTGTTCTTCTTTTTCTGCAAAATCCCAGTAGAGTACATAGCCATACCAAGGGAATTAGACCAAGACGTTCTGCGGGTAAAGGGTTATTGACCAACATGACTAGAGTGCAGTATTCTGAAGAGCAATTCATGAAATGGGTGAACTTTGTTGGTTCCCTCAAACACTCAGTTTTTAAGGCAGTCAAAAATAAGCTTGTGGCTTCCTACACTTTGCACGTTGATAAGAATCCTAGTGCTGGAGATTTTACCTCAATTCAAGAAGCCATCGATTCCCTTCCATTCGTCAATCTTGTTAGAGTGCTCATAAAAGTCCATGCAGGTGTCTACACGGAGAAGGTTAACATTCCTGCTTTCAAATCCTACATAACAATAGAGGGAGATGGTGCAGATGAAACCATTGTTAAATGGAGTGACACTGCTCAAACACCTGGTTCAAATGGGAGGCCATTGGGAACCTATGGTTCAGCAACTTTTGCAGTGAATTCGCCTTATTTCATTGCCAAGAACATCACATTCCAAAACACAACTCCTGTTCCTGCACCAGGAGCAATTGGAAAGCAAGCGGTAGCATTAAGGATTTCAGCAGACACAGCAGCATTCGTAGGCTGCAAATTCTTAGGAGCACAAGACACACTCTATGATCATGTGGGCAGACATTACTATAAGGATTGTTACATCGAAGGCTCTGTTGATTTCATATTCGGCAACTCTCTCTCACTATTTGAGGGATGTCACGTGCATGCGATAGCACAGAACACGGGGGCAGTAACAGCTCAAGGAAGGAGTAGTATGTTGGAGGACACAGGGTTCTCATTTGTGAACTGTAAGGTCACGGGATCAGGGGCACTATACCTTGGAAGGGCATGGGGACCCTTTTCTCGCGTGGTCTTTGCTTACACGTATATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAAACAACTGTTTTCTATGGGCAGTACAAGTGCACAGGACCTGGTTCAAGTTTTGCAGGGAGAGTTTCATGGTCAAGAGAACTCACTGATGAGGAAGCTACACCTTTTCTGTCACTTAGCTTTATTGATGGGACTGAATGGATCCAATTGTAG 1146 0.438 MSNLHYLFIFLAVVLLFLQNPSRVHSHTKGIRPRRSAGKGLLTNMTRVQYSEEQFMKWVNFVGSLKHSVFKAVKNKLVASYTLHVDKNPSAGDFTSIQEAIDSLPFVNLVRVLIKVHAGVYTEKVNIPAFKSYITIEGDGADETIVKWSDTAQTPGSNGRPLGTYGSATFAVNSPYFIAKNITFQNTTPVPAPGAIGKQAVALRISADTAAFVGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNSLSLFEGCHVHAIAQNTGAVTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNRETTVFYGQYKCTGPGSSFAGRVSWSRELTDEEATPFLSLSFIDGTEWIQL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3902g00042 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 75 380 - -
Vium3902g00042 381 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Vium3902g00042 381 Pfam Pectinesterase 91 375 IPR000070 GO:0030599|GO:0042545
Vium3902g00042 381 SUPERFAMILY Pectin lyase-like 78 380 IPR011050 -
Vium3902g00042 381 FunFam Pectinesterase 79 381 - -
Vium3902g00042 381 Gene3D - 78 381 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3902g00042 Vium-Chr3902 309034 313492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3902g00042 94 379 Carbohydrate Esterase AT5G47500 50.871 5.02e-103 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3902g00042 K01051 - gmx:100817924 715.687