Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3902g00041 ATGTCAAACTTGCATTACTTGTTCATCTTTTTAGCAGTTGTTCTTCTTTTTCTGCAAAATCCCAGTAGAGTACATAGCCATACCAAGGGAATTAGACCAAGACGTTCTGCGGGTAAAGGGTTATTGACCAACATGACTAGAGTGCAGTATTCTGAAGAGCAATTCATGAAATGGGTGAACTTTGTTGGTTCCCTCAAACACTCAGTTTTTAAGGCAGTCAAAAATAAGCTTGTGGCTTCCTACACTTTGCACGTTGATAAGAATCCTAGTGCTGGAGATTTTACCTCAATTCAAGAAGCCATCGATTCCCTTCCATTCGTCAATCTTGTTAGAGTGCTCATAAAAGTCCATGCAGGTGTCTACACGGAGAAGGTTAACATTCCTGCTTTCAAATCCTACATAACAATAGAGGGAGATGGTGCAGATGAAACCATTGTTAAATGGAGTGACACTGCTCAAACACCTGGTTCAAATGGGAGGCCATTGGGAACCTATGGTTCAGCAACTTTTGCAGTGAATTCGCCTTATTTCATTGCCAAGAACATCACATTCCAAAACACAACTCCTGTTCCTGCACCAGGAGCAATTGGAAAGCAAGCGGTAGCATTAAGGATTTCAGCAGACACAGCAGCATTCGTAGGCTGCAAATTCTTAGGAGCACAAGACACACTCTATGATCATGTGGGCAGACATTACTATAAGGATTGTTACATCGAAGGCTCTGTTGATTTCATATTCGGCAACTCTCTCTCACTATTTGAGGGATGTCACGTGCATGCGATAGCACAGAACACGGGGGCAGTAACAGCTCAAGGAAGGAGTAGTATGTTGGAGGACACAGGGTTCTCATTTGTGAACTGTAAGGTCACGGGATCAGGGGCACTATACCTTGGAAGGGCATGGGGACCCTTTTCTCGCGTGGTCTTTGCTTACACGTATATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAAACTACAAGTGCACAGGACCTGGTTCAAGTTTTGCAGGGAGAGTTTCATGGTCAAGAGAACTCACTGATGAGGAAGCTACACCTTTTCTGTCACTTAGCTTTATTGATGGGACTGAATGGATCCAATTGTAGTTTAACTCATACAAAGTTTCTATTTTTTTTTATTGATTTTCTAGTTTAA 1176 0.4269 MSNLHYLFIFLAVVLLFLQNPSRVHSHTKGIRPRRSAGKGLLTNMTRVQYSEEQFMKWVNFVGSLKHSVFKAVKNKLVASYTLHVDKNPSAGDFTSIQEAIDSLPFVNLVRVLIKVHAGVYTEKVNIPAFKSYITIEGDGADETIVKWSDTAQTPGSNGRPLGTYGSATFAVNSPYFIAKNITFQNTTPVPAPGAIGKQAVALRISADTAAFVGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNSLSLFEGCHVHAIAQNTGAVTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNRETTSAQDLVQVLQGEFHGQENSLMRKLHLFCHLALLMGLNGSNCSLTHTKFLFFFIDFLV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3902g00041 391 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Vium3902g00041 391 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 75 334 - -
Vium3902g00041 391 SUPERFAMILY Pectin lyase-like 78 334 IPR011050 -
Vium3902g00041 391 Pfam Pectinesterase 91 328 IPR000070 GO:0030599|GO:0042545
Vium3902g00041 391 Gene3D - 32 353 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3902g00041 Vium-Chr3902 309030 313495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3902g00041 94 336 Carbohydrate Esterase AT5G47500 51.029 3.14e-86 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3902g00041 K01051 - gmx:100817924 627.861