Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3902g00040 ATGGGGAGAGTCACAAGGTGGATGAAGAGTTTGTTTGGAATTTCAGGAGAGAAAGAGAAGAAACAAAACTTCATGGAATCTGGTTTTTCTGAGAGTAGTAATAATTCAAGAGTTTTGTGTCACAATCCAGGAACTATACCTCCCAACATTTCTCAAGCTGAGGCAGCTTGGTTACAGTCATTCTACACAGAGAAGGACAAAAACAAGCACGCCATTGCGGTTGCTGCGGCAACCGCAGCTGCGGCTGATGCTGCTGTGGCGGCAGCACAGGCCGCCGTTGCAGTTGTTAGGCTCACAAGCCAAGGAAGGGGTGGCACCATGTTTGGCGTTGGACCTGAGATATGGGCTGCTATCAAGATTCAAGCACTGTTCAGAGGATACCTGGCAAGGAAGGCACTGAGGGCATTAAAAGGATTGGTGAAGTTGCAGGCACTTGTCAGAGGGTATTTAGTGAGGAAGCAAGCAACAGCAACACTGCATAGTATGCAGGCTCTTATTAGAGCTCAAGCTAGAATACGGTCCCACCAATCTCGCAGGCTCATGAGTACGAAGAATGAAGCATTTAGATCTCAAAATAGAGCAAGAAGATCCATGGAGAGGTTTGATGATACTAGGAGTGAGTATGCAGTTCCAATCCACAACAGAAGAGCATCATCTTCTTTTGATGCTACACTTAACATCAACAACAGTGTTGATGGGAGCCCCAAAATAGTGGAAGTAGACACTTTCAGGCCTAAGTCAAGATCAAGAAGAACAATATCAGATTTTGGTGATGAGCCATCACTTCAGGCACTTTCCTCTCCCTTCTTTCCAATTTCATGTAGAGGTACCCCTACACGTTGGTCCATACCAGATCAAAGGAATTTTCAGGACTCTGAATGGGGGTTAACAGGAGAAGAAGGTCGGTTCTCTACAGCACAAAGCACTCCACGCTTCACAAATCCTTGTAGTTGTGACTCAGTTGTACCTATGACACCACAAAGTGTGTGTCCTGATGATAACTTGTTCCTAAGGCAATATGGGAAATTTCCAAACTACATGGCTAGTACTCAGTCTTTTAAGGCCAAGTTGAGGTCTCATAGTGCTCCAAAGCAACGACCAGAACCAAGTCCAAGGAAAAGGCTCTCCCTCAATGAAATGATGGAGTCTAGGAGTAGCTTGAGTGGTGTTAGAATGCAGAGGTCTTGCTCAAAGGCTCAAGAAGTCATTAATTTCAAGAATGCTGTGATGGGAAAGCTTCAGAAATCCACAGAATCTGTTAGGGAAACAGACAGAAACTATTTCCACCAGAGAGGATGGTGA 1302 0.4508 MGRVTRWMKSLFGISGEKEKKQNFMESGFSESSNNSRVLCHNPGTIPPNISQAEAAWLQSFYTEKDKNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGGTMFGVGPEIWAAIKIQALFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQARIRSHQSRRLMSTKNEAFRSQNRARRSMERFDDTRSEYAVPIHNRRASSSFDATLNINNSVDGSPKIVEVDTFRPKSRSRRTISDFGDEPSLQALSSPFFPISCRGTPTRWSIPDQRNFQDSEWGLTGEEGRFSTAQSTPRFTNPCSCDSVVPMTPQSVCPDDNLFLRQYGKFPNYMASTQSFKAKLRSHSAPKQRPEPSPRKRLSLNEMMESRSSLSGVRMQRSCSKAQEVINFKNAVMGKLQKSTESVRETDRNYFHQRGW 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3902g00040 433 ProSiteProfiles IQ motif profile. 137 164 IPR000048 GO:0005515
Vium3902g00040 433 Pfam IQ calmodulin-binding motif 115 134 IPR000048 GO:0005515
Vium3902g00040 433 Pfam IQ calmodulin-binding motif 140 154 IPR000048 GO:0005515
Vium3902g00040 433 Gene3D - 89 138 - -
Vium3902g00040 433 Pfam Protein of unknown function (DUF4005) 310 393 IPR025064 -
Vium3902g00040 433 ProSiteProfiles IQ motif profile. 116 141 IPR000048 GO:0005515
Vium3902g00040 433 ProSiteProfiles IQ motif profile. 161 190 IPR000048 GO:0005515
Vium3902g00040 433 PANTHER IQ-DOMAIN 5-RELATED 1 387 - -
Vium3902g00040 433 SMART iq_5 135 156 IPR000048 GO:0005515
Vium3902g00040 433 SMART iq_5 112 134 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3902g00040 Vium-Chr3902 297505 299328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3902g00040 1 392 IQD Protein Family AT3G16490 50.248 2.11e-89 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3902g00040 - - gmx:100788710 640.958