Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3902g00032 ATGAAAAAATTCACCTCATCATGTGTCAAAATGCCAATCCTCCCTTTTCTCTCCTTCCTCTTTCTGATCTTTGCAAACTCTCAGTCTCACTCTTTGATGTATGATGAAGAGCATGCAGTCCTATTGAAGATAAAACAATACCTGCAAAATCCACCGTTCCTCAATCACTGGATCCCATCAAACTCCTCACATTGCACTTGGCCGGAGATCACATGCATCAATGGCTCAGTCACTTCACTGACTATGTTCAACACCAACATCACTCAAACACTGCCACATTTCCTATGTGACCTCAAAAACCTCACACATGTAGATTTTCAGTTTAATTTCCTTCCTGGGGAGTTCCCGAAATCTCTCTACAACTGCTCCAAGCTTGAGTACCTTGACCTCTCACAGAACCTCTTTGTTGGTAAGATTCCTGATGACATTGACCACTTGGCTGGCTTGCGTTTTCTTAGCCTTGGTGGCAACAACTTCTCTGGTGATATTCCAGCCAGCATAGGGAGGTTGAAGGAGCTACGAAGCCTTCAACTTTATCAGAGTCTTTTCAATGGTACTTTCCCTGCTGAAATTGGGAATTTGTCCAACCTTGAGTTGTTGTATGTGTTCTCAAACCACATGTTCCCTCCTACAAAGTTTCCATCAAGCTTGACCCAGTTGAATAAATTGAAGATTTTTGATATGCATGAATCCAACTTGGTAGGGGAAATCCCCGAAACCATTGGAAACATGGTGGCATTGGAGGAATTGGATTTGTCAGTAAATGGTTTGAGTGGAGAAATTCCCAAAAGTTTGTTCATGCTGAAAAATCTGAGCAAACTATATATTTACAAGAACAGCCTCTCTGGGGACATACCCGAAGTGGTTGAAGCATTCAACTTGACAGAAATTGATCTTTCATACAATAATCTTAGTGGGAAAATACCAGATGATTTGGGAAAGCTCAGCAAGTTAATATTCTTGTCTTTGTCTACGAACCAATTATCAGGGAAGGTACCAGAAAGCATTGGTAGTCTGCCAGCTCTGACCGATTTTGTTGTTTTTCACAACAATTTATCAGGCACTCTTCCACCAGATTTCGGTCGGATCTCAAAGCTTGAAACTTTTCAGGTTGCATCTAATAGTTTCACAGGAAGTTTGCCAGAGAACTTGTGCTACCATGGAAGGTTAGTTGGTTTAACTGCTTTCGACAATAACCTGAGTGGGGAGTTGCCAGAATCTTTAGGAAGTTGCAGTAGCCTGCAAATTCTGAGGGTTGAAAACAATGAACTTTCTGGCAACATTCCTAGTGGTCTATGGACATCTTTTAACTTATCGACCATTAAGATAAACGAAAACAAGTTCACTGGTCAGCTTCCTGAAAGATTGTCTGAGAATCTCAGAGACATAGGCATAAGTTACAATCAGTTTTCTGGTAGAATTCCACATGGAGTGTCTTCCTGGAAGAATATTGTGGAATTTAATGCCAGTAACAACCTCTTCAATGGTAGTATTCCACCGGAGCTAACATCTCTTCCTGACCTAACAATTCTTCTGCTTGATCATAACCAGTTCACAGGACCACTTCCTTCAGATATAATATCATGGAAGTCCCTGATAAATCTAGATTTGAGCCACAATGAACTCTCTGGAGAAATCCCCCTTGCAATTGCTCAGTTGCCTGCCCTTAATATTTTGGATTTATCAGAGAACAGAATATCTGGCCAAATTCCACATCAACTAGCTCTTATGAGACCCACAAATATCAATCTGTCCTCCAATAGTTTGGTAGGAAGGATTCCAAGTGAACTTGAAAATCTTGTTTATGCTAGGAGCTTTTTGAACAATCCTGGTCTCTGTGCTGACACTCCAGTACTAAACCTTATCTTGTGCAATTCCAGGCCTCAAAGGGCAAGAATTGATAGAAGATATGCATCTCATGTTATAATCATAAGCCTGGTGTTAGCAGCCTCCTTGCTGGCTTTGTTGTCATTATTTTTGATGATCAGAGTTTACAGAAAAAGAAAGCAGGAACTGAAAAGGTCATGGAAGCTTACTTCCTTTCAAAGGCTCAGTTTCACAAAAGGAAATATCGTATCCTCAATGTCAGAACACAATATTATTGGCAGTGGTGGGTATGGTGCAGTGTATCGTGTCGCTGTTGGTGATACAGACTATGTCGCAGTGAAGAAGATACTCAGTAACAGAAAGTTAGAGGAGAAGCTTGTAAGTTCATTTCTTGCAGAAGTTGAGATACTGAGCAATATTCGTCATAACAACATTGTGAAGTTGCTATGCTGCGTCTCCAAAGAGGATTCTCTTCTCCTTGTCTACGAGTATCTTGAAAACCATAGCCTTGATAGATGGCTGCACAACAAAAGTAAGCAGACAGCTTCAGGTTCAGTCCTTGACTGGCCAAAGAGATTACATATAGCCATTGGAGCTGCTCAAGGTTTGTGCTATATGCATCATGACTGCTTACCACCTGTTGTTCATCGTGATGTGAAAACAAGTAACATCCTGCTGGATTCTAAATTCAATGCCAAAGTTGCTGATTTTGGTCTAGCCATGATGTTGATTAAGCCAGAAGAACTTGCAACCATGTCAGCTGTGGCTGGTACATTTGGCTATATTGCTCCAGAATATGCTCAAACAACAAGGGTCAATGAGAAGATAGATGTCTACAGCTTTGGAGTAGTCCTATTGGAACTGACAACAGGAAAAGAAGCTAATCATGGAGATGAGTACTCATCTCTGGCAGAATGGGCGTGGCGCCACATTCAGATAGGAGCAGATGTAGAAGATATTTTGGACAAAGAAATTAAGGAAGCTTGTTACATGGATGAAATCTGCAACATCTTCAAACTTGGGGTGATGTGCACTGCAACACTTCCAGCTAGTAGACCTTCCATGAAGGAAGTCCTGAAAATTTTGCTCTCCTGCAGCAGTCCACTCAGCATTGGAGACAAGAATGTTGGCTTCTATGATTCTGCTCCACTTCTTAAGAATTCAAAATGGGAAAATAATATGGAATATTATACCGATGATGATTGA 3033 0.4098 MKKFTSSCVKMPILPFLSFLFLIFANSQSHSLMYDEEHAVLLKIKQYLQNPPFLNHWIPSNSSHCTWPEITCINGSVTSLTMFNTNITQTLPHFLCDLKNLTHVDFQFNFLPGEFPKSLYNCSKLEYLDLSQNLFVGKIPDDIDHLAGLRFLSLGGNNFSGDIPASIGRLKELRSLQLYQSLFNGTFPAEIGNLSNLELLYVFSNHMFPPTKFPSSLTQLNKLKIFDMHESNLVGEIPETIGNMVALEELDLSVNGLSGEIPKSLFMLKNLSKLYIYKNSLSGDIPEVVEAFNLTEIDLSYNNLSGKIPDDLGKLSKLIFLSLSTNQLSGKVPESIGSLPALTDFVVFHNNLSGTLPPDFGRISKLETFQVASNSFTGSLPENLCYHGRLVGLTAFDNNLSGELPESLGSCSSLQILRVENNELSGNIPSGLWTSFNLSTIKINENKFTGQLPERLSENLRDIGISYNQFSGRIPHGVSSWKNIVEFNASNNLFNGSIPPELTSLPDLTILLLDHNQFTGPLPSDIISWKSLINLDLSHNELSGEIPLAIAQLPALNILDLSENRISGQIPHQLALMRPTNINLSSNSLVGRIPSELENLVYARSFLNNPGLCADTPVLNLILCNSRPQRARIDRRYASHVIIISLVLAASLLALLSLFLMIRVYRKRKQELKRSWKLTSFQRLSFTKGNIVSSMSEHNIIGSGGYGAVYRVAVGDTDYVAVKKILSNRKLEEKLVSSFLAEVEILSNIRHNNIVKLLCCVSKEDSLLLVYEYLENHSLDRWLHNKSKQTASGSVLDWPKRLHIAIGAAQGLCYMHHDCLPPVVHRDVKTSNILLDSKFNAKVADFGLAMMLIKPEELATMSAVAGTFGYIAPEYAQTTRVNEKIDVYSFGVVLLELTTGKEANHGDEYSSLAEWAWRHIQIGADVEDILDKEIKEACYMDEICNIFKLGVMCTATLPASRPSMKEVLKILLSCSSPLSIGDKNVGFYDSAPLLKNSKWENNMEYYTDDD 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3902g00032 1010 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Vium3902g00032 1010 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Vium3902g00032 1010 Pfam Leucine rich repeat 293 352 IPR001611 GO:0005515
Vium3902g00032 1010 FunFam Receptor-like protein kinase HSL1 675 773 - -
Vium3902g00032 1010 FunFam Receptor-like protein kinase HSL1 isoform A 34 185 - -
Vium3902g00032 1010 Gene3D Ribonuclease Inhibitor 33 211 IPR032675 -
Vium3902g00032 1010 Gene3D Transferase(Phosphotransferase) domain 1 774 981 - -
Vium3902g00032 1010 PRINTS Leucine-rich repeat signature 532 545 - -
Vium3902g00032 1010 PRINTS Leucine-rich repeat signature 553 566 - -
Vium3902g00032 1010 FunFam Kinase family with leucine-rich repeat domain-containing protein 774 986 - -
Vium3902g00032 1010 SUPERFAMILY Protein kinase-like (PK-like) 688 971 IPR011009 -
Vium3902g00032 1010 SUPERFAMILY L domain-like 42 377 - -
Vium3902g00032 1010 ProSiteProfiles Protein kinase domain profile. 695 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3902g00032 1010 Pfam Protein kinase domain 697 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3902g00032 1010 SMART LRR_typ_2 315 339 IPR003591 -
Vium3902g00032 1010 SMART LRR_typ_2 553 577 IPR003591 -
Vium3902g00032 1010 SMART LRR_typ_2 146 170 IPR003591 -
Vium3902g00032 1010 SMART LRR_typ_2 505 529 IPR003591 -
Vium3902g00032 1010 SMART LRR_typ_2 244 268 IPR003591 -
Vium3902g00032 1010 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 190 290 - -
Vium3902g00032 1010 SMART serkin_6 695 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3902g00032 1010 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 240 971 - -
Vium3902g00032 1010 SUPERFAMILY RNI-like 291 602 - -
Vium3902g00032 1010 Gene3D Ribonuclease Inhibitor 353 456 IPR032675 -
Vium3902g00032 1010 Gene3D Ribonuclease Inhibitor 457 545 IPR032675 -
Vium3902g00032 1010 Gene3D Ribonuclease Inhibitor 546 612 IPR032675 -
Vium3902g00032 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Vium3902g00032 1010 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524
Vium3902g00032 1010 Gene3D Ribonuclease Inhibitor 212 352 IPR032675 -
Vium3902g00032 1010 FunFam Receptor-like protein kinase HSL1 isoform A 298 624 - -
Vium3902g00032 1010 Gene3D Phosphorylase Kinase; domain 1 677 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3902g00032 Vium-Chr3902 238044 241648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3902g00032 37 971 Receptor kinase-like Gene Family AT5G25930 53.128 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium3902g00032 Pkinase 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3902g00032 - - gmx:100785907 1656.34