Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3902g00031 ATGGAACTGTTCACCTCATCATCATCATCATCATCATATCTTAAACTGCTGCTTCAGTCTGTTGTGATCTTACTCCTGGTTTTTACGCGTGCAAACTCCGAATCTCAATCTCAGTTGCATGATCAAGAACATGAAATCTTACTGAGGATAAAGCAGTACCTTGAAAACCCTTCATATCTCAGTCACTGGACATCATCAAACATCGCTCACTGCTCTTGGCCAGAGATAACGTGTAGCAACGACGATTCTGTCACTGGATTGACATTGTCCAACAATAGCATCACTCAGACCATACCCTCTTTCATATGTGACCTCAAAAACCTCACACACGTTGATTTCTACAACAATCTGATTCCTGGGGAGTTCCCAACACATCTCCTCAATTGCTCCAAGTTGGAGTACCTAGACCTGTCTATGAACGACTTTGTTGGCAGCATCCCTCGTGACATTGGCAACTTATCTAATCTGCAGTTTCTTAACCTTGGTTACACCAATTTCTCTGGTGACATTCCTTCTAGCATTGGAAGTCTAAAGCAACTCACAAATCTTCAATTTCAGAACTGCCTATTGAATGGAACTATCCCCTCTGAGATTGGCAACTTGTCCAATCTTGAATTCTTGGATTTGTCATCTAACTCCATGTTCCCTCCTTCGAGGTTGCATGATAACTGGATGCGGTTGAGCAAGTTGAAGTTCTTTTTCATGTTTGACTGCAACTTGGTCGGGGAGATCCCTGAAACTATTGGAAACATGGTGGCTTTGGAGAGATTGGATCTATCGCAGAACGATTTAAGTGGTGAAATTCCCGGGGCCTTGTTCATGCTGAAGAATCTGAACATAATGTTTCTATCTAGAAACAAGCTTTCTGGGGAAATACCTGATGTGGTTGAAGCACTGAATTTGACCATCATTGATCTAACGCGAAATTCTCTCTCAGGAAAAATACCAGATGGTTTTGGAAAGCTTCAAAATTTAACTGGTTTGGCTTTGTCTTTAAATAACTTACATGGGGAGATACCACAGAGCATAGGCCTTCTTCCATCTCTGATAGATTTTAAAGTGTTTTCCAACAATTTATCAGGTACTCTTCCTCCTGACTTTGGCCGCCACTCAATGCTTAAAACCTTTTTGATTTCAAATAATAGTTTTAGTGGAAAGCTACCCGAGAACTTGTGCTATAATGGTCACTTGGAAAACTTAACTACCTATGAAAATCATCTTAGTGGGGAGTTGCCACAATCACTTGGTAATTGTAGTAGCCTGACAGATCTGAAAATTTATAGTAACGAGTTTTCTGGTAGCATTCCAAGTGGTCTTTGGACTTTCAATCTGTCAACTTTCATGGTGAGCCATAACAAGTTCACTGGTGAGCTTCCTGAGAGATTGTCCTCAACTATTTCGCGTTTGGAGATAGATTACAATCAGTTTTATGGTAGTATTCCAACTGGGGTGTCTTCATGGACTAATGTGGTTGTGTTTCAAGCCAGTAAGAACAACCTTAATGAGAGTATTCCAAGAGAGTTAACAGCTCTTCCAATGCTAACAACACTATTGCTTGATCAGAACCAGCTCACAGGACCACTTCCGTCTGATATAATATCATGGAAGTCCCTTAGGAATCTAAATTTGCGACAAAACCAACTCTCTGGACATATTCCTGATTCAATTGGTCATTTACCTGATCTCAACCAACTTGATCTGTCAGAAAATCAGTTCTCGGGTCAAATTCCTTCTCTTCCTTCCAGACTCACCAATCTCAATCTTTCCTCCAATTACTTGACAGGGAGGGTTCCAAGTACATTTGAAAATTCTGCTTTTGAAACCAGCTTTTTGAACAATTCTGACCTCTGTTCTGATACTCCAGCACTGAATCTCAGGTCATGTAATCATAGCCCTCAAAGTGAAAGCAATGACTCATCTTGGTCTGTTGCTTTGATCATAAGTCTGGTGGTAGTGGCCTGTTTCCTGGCTTTGTTGGCATCGTTCTTGATAATCAGATTTTACAGAAAAAAAAAGAGTGGATTGGATAGGTCATGGAAGCTCATTTCTTTCCAAAGGCTGAGTTTCACTGAATCAAACATAGTGTCATCACTCACAGAAAATAATATTATTGGCAGTGGTGGCTATGGTGCAGTATACCGCGCTGCAGTTGATGGTTTAGGCTATGTTGCTGTCAAGAAAATTTGGGACAACGAAAAGATAAACAAGAAGCTTGAGAGCTCATTTCACACTGAAGTTAAAATATTGAGCAGCATTCGTCACAAAAACATTGTGAAGTTGATGTGTTGTATCTCTAAAGAGGACTCTATGCTCCTTGTGTATGAGTATGTGGAAAACCACAGCCTTGACAGGTGGTTGCACAGGAAGAATAAGTCATCATCAGCTGTTTCAGGTTCACTCCATCGTGTTGCCCTTGATTGGCCAAAGAGATTGCATATAGCAATTGGAACTGCACAAGGTTTGAGCTACATGCATCATGATTGTTCGCCACCTATTGTTCATCGAGATGTGAAAACAAGCAACATTCTTTTGGATGATCAATTCAATGCAAAAGTTGCTGATTTTGGTTTGGCCAGGATCTTGGTGAAACCAGGGGAACTTGCCACCATGTCAGCTGTGATTGGATCATTTGGCTATATGGCTCCAGAGTATATCCAAACAACTCGAGTAAGTGAAAAGATTGATGTCTACAGCTTTGGGGTAATCCTATTGGAACTTACAACTGGCAAAGAAGCTAATTATGGTGATGAGCACTCATCTCTTGCAGAGTGGGCGTGGCGGCACCATCAATTAGGAAGCAACATAGAAGAGCTGCTAGACAAAGAAGTCGTGGAATCCAGTTACTCAGGTGAAATGTGTAAGGTTTTCACACTAGGTCTCATGTGCACTGAAACACTTCCTTCTGCTAGACCATCCATGAAAGAGGTTCTACAAGTTTTGCTTTCTTGTGATGAATCATTTTCTAAGGGAGAGAGTAATATTTGCCACTGTGATGATGTTGTTCCCTTTCTTAAAAATTCAAGAAGAGAGCACAAGTTGGATATTGATAATGATAGCTAG 3060 0.4078 MELFTSSSSSSSYLKLLLQSVVILLLVFTRANSESQSQLHDQEHEILLRIKQYLENPSYLSHWTSSNIAHCSWPEITCSNDDSVTGLTLSNNSITQTIPSFICDLKNLTHVDFYNNLIPGEFPTHLLNCSKLEYLDLSMNDFVGSIPRDIGNLSNLQFLNLGYTNFSGDIPSSIGSLKQLTNLQFQNCLLNGTIPSEIGNLSNLEFLDLSSNSMFPPSRLHDNWMRLSKLKFFFMFDCNLVGEIPETIGNMVALERLDLSQNDLSGEIPGALFMLKNLNIMFLSRNKLSGEIPDVVEALNLTIIDLTRNSLSGKIPDGFGKLQNLTGLALSLNNLHGEIPQSIGLLPSLIDFKVFSNNLSGTLPPDFGRHSMLKTFLISNNSFSGKLPENLCYNGHLENLTTYENHLSGELPQSLGNCSSLTDLKIYSNEFSGSIPSGLWTFNLSTFMVSHNKFTGELPERLSSTISRLEIDYNQFYGSIPTGVSSWTNVVVFQASKNNLNESIPRELTALPMLTTLLLDQNQLTGPLPSDIISWKSLRNLNLRQNQLSGHIPDSIGHLPDLNQLDLSENQFSGQIPSLPSRLTNLNLSSNYLTGRVPSTFENSAFETSFLNNSDLCSDTPALNLRSCNHSPQSESNDSSWSVALIISLVVVACFLALLASFLIIRFYRKKKSGLDRSWKLISFQRLSFTESNIVSSLTENNIIGSGGYGAVYRAAVDGLGYVAVKKIWDNEKINKKLESSFHTEVKILSSIRHKNIVKLMCCISKEDSMLLVYEYVENHSLDRWLHRKNKSSSAVSGSLHRVALDWPKRLHIAIGTAQGLSYMHHDCSPPIVHRDVKTSNILLDDQFNAKVADFGLARILVKPGELATMSAVIGSFGYMAPEYIQTTRVSEKIDVYSFGVILLELTTGKEANYGDEHSSLAEWAWRHHQLGSNIEELLDKEVVESSYSGEMCKVFTLGLMCTETLPSARPSMKEVLQVLLSCDESFSKGESNICHCDDVVPFLKNSRREHKLDIDNDS 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3902g00031 1019 Pfam Leucine rich repeat N-terminal domain 41 79 IPR013210 -
Vium3902g00031 1019 Pfam Leucine Rich Repeat 537 559 IPR001611 GO:0005515
Vium3902g00031 1019 Pfam Leucine Rich Repeat 300 322 IPR001611 GO:0005515
Vium3902g00031 1019 FunFam Kinase family with leucine-rich repeat domain-containing protein 777 996 - -
Vium3902g00031 1019 Pfam Protein kinase domain 700 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3902g00031 1019 SMART LRR_typ_2 153 177 IPR003591 -
Vium3902g00031 1019 SMART LRR_typ_2 322 346 IPR003591 -
Vium3902g00031 1019 SMART LRR_typ_2 251 275 IPR003591 -
Vium3902g00031 1019 SMART LRR_typ_2 201 227 IPR003591 -
Vium3902g00031 1019 SMART LRR_typ_2 559 586 IPR003591 -
Vium3902g00031 1019 SMART LRR_typ_2 105 129 IPR003591 -
Vium3902g00031 1019 SMART LRR_typ_2 511 535 IPR003591 -
Vium3902g00031 1019 Gene3D Ribonuclease Inhibitor 219 368 IPR032675 -
Vium3902g00031 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Vium3902g00031 1019 FunFam Kinase family with leucine-rich repeat domain-containing protein 680 776 - -
Vium3902g00031 1019 SUPERFAMILY RNI-like 237 615 - -
Vium3902g00031 1019 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 396 981 - -
Vium3902g00031 1019 ProSitePatterns Protein kinases ATP-binding region signature. 704 727 IPR017441 GO:0005524
Vium3902g00031 1019 SMART serkin_6 698 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3902g00031 1019 SUPERFAMILY Protein kinase-like (PK-like) 691 980 IPR011009 -
Vium3902g00031 1019 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 197 297 - -
Vium3902g00031 1019 Pfam Leucine rich repeat 84 142 IPR001611 GO:0005515
Vium3902g00031 1019 CDD STKc_IRAK 704 980 - -
Vium3902g00031 1019 Gene3D Ribonuclease Inhibitor 369 637 IPR032675 -
Vium3902g00031 1019 FunFam Receptor-like protein kinase HSL1 isoform A 305 628 - -
Vium3902g00031 1019 FunFam Receptor-like protein kinase HSL1 isoform A 40 184 - -
Vium3902g00031 1019 Gene3D Ribonuclease Inhibitor 40 218 IPR032675 -
Vium3902g00031 1019 SUPERFAMILY L domain-like 43 298 - -
Vium3902g00031 1019 Gene3D Transferase(Phosphotransferase) domain 1 777 999 - -
Vium3902g00031 1019 Gene3D Phosphorylase Kinase; domain 1 675 776 - -
Vium3902g00031 1019 ProSiteProfiles Protein kinase domain profile. 698 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3902g00031 Vium-Chr3902 231690 235660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3902g00031 37 980 Receptor kinase-like Gene Family AT5G25930 50.157 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium3902g00031 Pkinase 7.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3902g00031 - - gmx:100798963 1626.3