Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3902g00030 ATGACAATACCATTTTACTACTGTCTAACCATCTTCCTATTCCTGAGCTGTGTAAAATCTCAGATTCAGCTGCAAGATCAAGAGCATGCAGTGTTACTGCAGATAAAGCAGCACCTACAAAACCCTTCGTTCCTCAGTCACTGGACCCCTTCAAACACCCGTCACTGCTCCTGGTCTGAGATAACATGCACCGATGACTCTGTCACTGGATTAACTCTGTTCAAGAGCAATATCAATCAAACACTTCCTAATTTTATGTGTGATCTTAAAAATCTCACACATGTTAATTTCAGCTTTAATTCCATTCCGGGGGAGTTTCCAACGTTTCTCTATAAATGTTCCAAGCTGGTGTCATTGGACCTTGAAGGGAATGAATTTTCTGGTAGCATTCCTAATGACATAGACAAGTTGGTTAACTTGCAGCATCTTAATCTCGGTTCCACCAGCTTTAGTGGTGATATTCCTGCAAGCATTGGAGGGTTGAAGCAACTGAGATTTCTTCAACTTCACTATTGTCTGTTTAATGGCACTTTTCCTTCTGAGAGTATTGCCAACTTGTTCAATCTTGAATTCTTGGACATTTCCTCTAACTTAGTGCTCCCTCCTTCAAAGTTCCCATCAGGCCTGACCCAGTTGAAAAAACTGAAGTTCTTGCACATGTACAGTTGCAACTTCTTCGGGGAAATTCCTGATACCATCGGAGAACTGGTGGCTTTAGAGAACTTGGATTTGTCACGAAGCAATTTCAGTGGACACATTCCCAAAGGCTTGTTCATGCTCAGGAATTTGACCATACTCTACCTCTTCAATAACAGTCTCTCTGGGGAGATTCCTGGTGAGATTGAAGCATTGAATTTGATCGAACTCGATCTTGCACAGAACAATCTCGCAGGGAGAATACCTCATGATTTTGGGAAGCTCCAAAAGTTAAGATGGTTAAGTTTGTCTCTCAATAACTTGTCAGGGGAGATTCCACAAAGCTTAGGCCGTCTTCCATCTCTCAAACATATTCGTATCATATTCAACAATTTTTCAGGTATTCTTCCTCCTGATTTAGGTCGCTACTCGGAGCTCAAAACATTTCTGGTTGCAAACAATAGTTTCAGTGGAAAGCTCCCGGAGAACTTATGCTATCATGGCCAGTTACAGAATTTATCTGCTTATTGTAATTATCTGAGTGGGAACTTACCAGAGTCACTTGGCCACTGTAGTAGTTTGACTGATGTAAAAATTTATAGCAATGAGTTTTCTGGCAACATTCCTAGTGGTCTTTGGACTCTCAACTTGTCAGATTTCATGGTGAGCAATAACAAGTTCACTGGTGAGCTTCCTGAGAGATTTTCCCCAACTATTTCACGCTTGGAGATAAGTCACAACCAGTTTTCTGGTAGAATTCCAACTGGGGTATCTTCATGGACTAACATGGTTGTGTTTAAAGCCAGCGAAAACTACCTCAATGGGAGTGTTCCAAAGGAGTTAACAAATCTTTCCATGCTAACAACTCTATTGCTTGATCATAACCATCTCACAGGGCCACTTCCATCAGATATAATATCATGGAAGTCCCTAGAGAATCTAAATTTGAGCCATAACCAACTCTCCGGAAAAATCCCAGATGAAATTGGTCAGTTGCCTGTCCTCAATCAGCTTGACCTGTCAGAAAACCAGTTCACAGGTCAAGTTCCTTCACTACTTCCTAGACTTACTAATCTCAACCTATCCTCTAATCATCTTACAGGGAAGGTTCCAAATGAGTTAGAAATCTCTGTGTATTCCACCAGCTTTTTGAACAATCCTGGCCTCTGTGCTGATACCTCAGTACTGAATCTGAGCCTGTGCAGTGTTGGTGCTGGCTTTGAAAAGAAAACCAAAGGCTCTTCTTGGTCTATTGCTTTGATTCTGTGTCTGGTGGCAGTAGCCTTCTTGTTGGCTTTGCTGATATCAATCATGATTATCAAACTTTTCAGAAGAGGGAAACATGTGTTGGATAACTCATGGAAACTCGTCTCCTTTCAAAGGTTGAGTTTCACCGAATCAGACATAGTGTCATCAATGACAGAACACAATGTTATTGGAAGTGGTGGATTTGGCACAGTGTACCGTGTCCCTGTTGATGGTTTAGACTATATTGCTGTGAAAAAGATCTCAAGCAACAGAAAGTTAGACCGAAAGCTAGAGAGCTCGTTTCGTGCAGAAGTGAAAATACTGAGCAACATTCGTCATAAGAACATTGTGAAGTTGTTGTGTTGCATCTCTAATGAGGATTCTATGCTCCTTGTGTATGAGTATTTGGAAAACCGTAGCTTAGACAGGTGGCTGCACAATAAGGACAAATCATCAACTGTGTCGGTTTCAGTCGATCATTTTGTGCTTGATTGGCCAAAGAGATTGGAAATTTCCATTGGGGTTGCTCATGGTCTGTGCTACATGCACCATGATTGCTTTCCACCGATTGTTCATAGAGATGTAAAATCAAGCAACATCCTTTTGGATGCTCAGTTCAATGCAAAAGTAGCTGATTTTGGTCTGGCTAGGATGTTAATGAAGCTAGGGGATCTTGCTACCATGTCTTCAGTGGTTGGCTCATTTGGCTACATGGCTCCAGAATATGTTCAAACAAGGCGAGTCAGTGAGAAGATTGATGTGTTCAGCTTTGGGGTTGTACTGCTGGAGCTGACAACAGGTAAAGAAGCTAATTATGGTGATGAACATTCTTCCCTTGCAGAGTGGGCATGGCGTCACATTATCGTGGGAAGCAAAATAGAAGAGCTGCTAGACAATGATTTCATGGATCCAAGTTACACAAATGAAATGTGCAGTGTTTTCAAACTTGGGGTCTTGTGCACTTCCACACTTCCTGCTAATAGGCCTTCCATGAAAGAGGTGCTACACATGTTGGTCACCATAGGAGAAGGGCTTGCTTTTGGAGAGGGGAATGTTAGGCACTTTGATGGTGTTCCTCTTCTTAAGAATTCAAGATGGGAGTGTAGGTTTGATGCTATTGATAATGATAGTGATTAG 3021 0.4171 MTIPFYYCLTIFLFLSCVKSQIQLQDQEHAVLLQIKQHLQNPSFLSHWTPSNTRHCSWSEITCTDDSVTGLTLFKSNINQTLPNFMCDLKNLTHVNFSFNSIPGEFPTFLYKCSKLVSLDLEGNEFSGSIPNDIDKLVNLQHLNLGSTSFSGDIPASIGGLKQLRFLQLHYCLFNGTFPSESIANLFNLEFLDISSNLVLPPSKFPSGLTQLKKLKFLHMYSCNFFGEIPDTIGELVALENLDLSRSNFSGHIPKGLFMLRNLTILYLFNNSLSGEIPGEIEALNLIELDLAQNNLAGRIPHDFGKLQKLRWLSLSLNNLSGEIPQSLGRLPSLKHIRIIFNNFSGILPPDLGRYSELKTFLVANNSFSGKLPENLCYHGQLQNLSAYCNYLSGNLPESLGHCSSLTDVKIYSNEFSGNIPSGLWTLNLSDFMVSNNKFTGELPERFSPTISRLEISHNQFSGRIPTGVSSWTNMVVFKASENYLNGSVPKELTNLSMLTTLLLDHNHLTGPLPSDIISWKSLENLNLSHNQLSGKIPDEIGQLPVLNQLDLSENQFTGQVPSLLPRLTNLNLSSNHLTGKVPNELEISVYSTSFLNNPGLCADTSVLNLSLCSVGAGFEKKTKGSSWSIALILCLVAVAFLLALLISIMIIKLFRRGKHVLDNSWKLVSFQRLSFTESDIVSSMTEHNVIGSGGFGTVYRVPVDGLDYIAVKKISSNRKLDRKLESSFRAEVKILSNIRHKNIVKLLCCISNEDSMLLVYEYLENRSLDRWLHNKDKSSTVSVSVDHFVLDWPKRLEISIGVAHGLCYMHHDCFPPIVHRDVKSSNILLDAQFNAKVADFGLARMLMKLGDLATMSSVVGSFGYMAPEYVQTRRVSEKIDVFSFGVVLLELTTGKEANYGDEHSSLAEWAWRHIIVGSKIEELLDNDFMDPSYTNEMCSVFKLGVLCTSTLPANRPSMKEVLHMLVTIGEGLAFGEGNVRHFDGVPLLKNSRWECRFDAIDNDSD 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3902g00030 1006 SUPERFAMILY Protein kinase-like (PK-like) 679 967 IPR011009 -
Vium3902g00030 1006 Gene3D Phosphorylase Kinase; domain 1 662 763 - -
Vium3902g00030 1006 FunFam Receptor-like protein kinase HSL1 isoform A 25 176 - -
Vium3902g00030 1006 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Vium3902g00030 1006 Gene3D Transferase(Phosphotransferase) domain 1 764 974 - -
Vium3902g00030 1006 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 260 967 - -
Vium3902g00030 1006 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Vium3902g00030 1006 FunFam Receptor-like protein kinase HSL1 isoform A 290 613 - -
Vium3902g00030 1006 Pfam Leucine Rich Repeat 522 542 IPR001611 GO:0005515
Vium3902g00030 1006 Pfam Leucine Rich Repeat 115 137 IPR001611 GO:0005515
Vium3902g00030 1006 Pfam Protein kinase domain 687 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3902g00030 1006 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 182 282 - -
Vium3902g00030 1006 SUPERFAMILY L domain-like 36 347 - -
Vium3902g00030 1006 Gene3D Ribonuclease Inhibitor 136 202 IPR032675 -
Vium3902g00030 1006 SMART serkin_6 685 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3902g00030 1006 ProSiteProfiles Leucine-rich repeat profile. 522 544 IPR001611 GO:0005515
Vium3902g00030 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Vium3902g00030 1006 SMART LRR_typ_2 186 212 IPR003591 -
Vium3902g00030 1006 SMART LRR_typ_2 260 284 IPR003591 -
Vium3902g00030 1006 SMART LRR_typ_2 496 520 IPR003591 -
Vium3902g00030 1006 SMART LRR_typ_2 521 544 IPR003591 -
Vium3902g00030 1006 SMART LRR_typ_2 307 331 IPR003591 -
Vium3902g00030 1006 SMART LRR_typ_2 137 161 IPR003591 -
Vium3902g00030 1006 SMART LRR_typ_2 565 589 IPR003591 -
Vium3902g00030 1006 FunFam Kinase family with leucine-rich repeat domain-containing protein 667 763 - -
Vium3902g00030 1006 Gene3D Ribonuclease Inhibitor 336 610 IPR032675 -
Vium3902g00030 1006 FunFam Kinase family with leucine-rich repeat domain-containing protein 764 981 - -
Vium3902g00030 1006 ProSiteProfiles Protein kinase domain profile. 685 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3902g00030 1006 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Vium3902g00030 1006 Gene3D Ribonuclease Inhibitor 203 335 IPR032675 -
Vium3902g00030 1006 SUPERFAMILY RNI-like 241 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3902g00030 Vium-Chr3902 223978 227866 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3902g00030 23 970 Receptor kinase-like Gene Family AT5G25930 50.000 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium3902g00030 Pkinase 2.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3902g00030 - - gmx:100819744 1583.16