Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3902g00020 ATGGGTTCTCCAAGAATGGATGAAACTGAGACACAAAAGGTAGAGATGAGAAGAAAAGGGAGAGCTTCCATAGCCATCATTTTGAGATATGCTGATTGGATTGATGTTGTGCTCATGCTAATGGGTGCTTTGGGAGCAATTGGAGATGGCATGTCCACAAATATTTTGTTGCTGTTTGCAAGCCGTATCATGAACAGCCTAGGTTACAGTAATAACCAACAAAGTACTAAGACATACATGGCTGAGGTTGAAAAGTGCAGCTTATATTTTGTCTACTTGGGATTAGCAGTGATGGTGGTGGCCTTCATGGAAGGGTATTGCTGGAGCAAAACAAGTGAGAGACAGGTCCTAAGAATTCGTTACAAGTACTTGGAAGCTGTCCTAAGACAAGAAGTAGGGTTTTTCGATTCCCAAGAAGCAACTACTTCTGAAATCATTAACAGCATATCAAAAGACACTTCTCTCATCCAAGAAGTTCTGAGTGAAAAGGTGCCCCTATTTTTGATGCACTCATCATCATTCATATCTGGGGTTGCGTTTGCCACATATTTTTCTTGGAGGTTGGCCTTGGTAGCATTTCCAACGCTGCTTCTTCTCATCATCCCTGGCATGATTTATGGAAAGTATCTCATCTATCTGTCAAAGTCCTCTGTGAAAGAATATGGCAAAGCAAACAGCATTGTAGAACAGGCACTTAGCTCGGTGAAAACAGTGTATTCATTCACTGCAGAGAAGAGAATCACTGGAAGATATTCAGACATATTGTGTAGAACTTCAAGGCTTGGAATCAAGCAAGGAATAGCAAAGGGTCTTGCAGTAGGAAGCACAGGTCTCTCTTTTGCAATATGGGCATTCATTGCTTGGTATGGAAGCCGTTTGGTCATGTACAAAGGTGAAAGTGGTGGAAGGATCTATGCATCAGGCATTTCCTTCATAATGTGTGGACTATCTCTGGGAGTGGTGCTTCCTGATTTAAAGTACTTCACAGAAGCATCTGTTGCAGCATCAAGAATATTTGACATGATTGATCGAATACCATTAATTGATGGTGAAGACACAAAAGGGCTTGTGTTAGATCACATGAGTGGGAAGCTAGAGTTTGAGCATGTGAAATTCACATACCCTTCTCGTCCAGATATGGTTGTGCTGAGTGATTTCACTCTGCAAGTTGAAGCAGGGAAAACGGTTGCTCTAGTTGGTGCAAGTGGAAGTGGGAAGTCCACAGCAATAGCATTGATGCAGAGATTTTATGATGCAGATGAAGGTGTTGTGAGGGTTGATGGTGTAGACATAAAAAGCCTTCAATTGAAATGGATAAGAGGGAAAATGGGGCTTGTGAGTCAAGAACATGCAATGTTTGGAACTTCCATAAAGGAGAATATCATGTTTGGGAAAACAGATGCTACCATGGATGAAATAGTAGCAGCAGCCTCAGCAGCCAATGCTCATAACTTCATAAGGCAGCTTCCTGAAGGTTATGAAACTAAGATTGGAGAAAGAGGAGCACTTCTTTCAGGAGGACAAAAGCAGCGACTAGCCATTGCAAGAGCCATCATAAAGAATCCTGTAATTCTCCTACTTGATGAAGCAACCAGTGCTCTTGACTCTGAATCAGAATTACTGGTTCAGAATGCCCTCGATCAGGCCTCCATGGGAAGGACTACATTGGTTGTTGCACACAAGCTATCAACTATTCGAAATGCAGACCTGATAGCAGTTGTCAGTGGTGGTCGAATCATTGAAACCGGCACACACAATGAACTCATGAACAGACAAAATGGCCACTATGCAAACCTGGCAAAGTTACAGACACAATTGAGCATGGATGAGCAAGATCAAAATTCAGAACTAGGTGCTCTTTCAGCAGCAAGAAGCAGTGCAGGTAGACCAAGCACAGCAAGGTCGAGTCCTGCAATATTTCCAAAGTCACCGTTGCCTGATGAAGCCAGCAACCCATCTCCAGTTTCTCACCCTCCACCATCTTTCACCAGACTTCTCTTTCTGAATGCTCCTGAATGGAAACAAGGTCTAATTGGGACTCTCTCAGCCATAGCCTTTGGCTCAGTTCAACCACTATATGCTTTAACCATAGGGGGTATGATTTCTGCCTTTTTTGCCAAAAGCCATCTGGAAATGATGCACAGAATCAGGACTTATTCTTTGATTTTCTGTTCCCTTTCCCTTGCCTCTATCACTCTCAATCTCTTGCAACACTACAATTTTGCTTATATGGGAGCCATGTTAACCAAAAGGATAAGACTGCGCATGCTGGAGAATATCTTAACCTTTGAAACTGCTTGGTTTGATGAGGAACAAAACTCCAGTGGAGCATTATGCTCAAGGTTAAGCTATGAGGCTTCCATGGTGAAGTCCCTTGTGGCAGACAGACTCTCTTTAATAGTCCAAACCACTTCTGCTGTCACCATTGCAATGATCATAGGGCTTGCCGTGGCTTGGAAGCTAGCTCTTGTTATGATAGCAGTGCAGCCACTCACAATTCTTTGCTTTTATACAAGAAAAGTGTTGCTCTCCACACTCTCGACAAAATTTGTTAAGGCACAGAATCAGAGTACACAGATTGCCGTGGAGGCAGTTTATAATCACAGAATTGTGACTTCTTTTGGGAGCATTACAAAAGTTCTACGGCTATTTGATGAGGCGCAAGAGGCTCCAAGGAAGGAGGCAAGGAAGAAGGCTTGGCTGGCTGGCATAGGAATGGGTTCTGCTCAGTGCCTGACGTTCATGTCATGGGCTTTGGATTTCTGGTATGGTGGTACTTTGGTGGAAAAGAGAGAAATATCAGCTGGGGATGTGTTCAAAACATTTTTCGTTTTGGTGAGCACTGGCAAGGTCATAGCTGATGCTGGAAGCATGACTTCTGACCTTGCCAAGAGTTCAACAGCAGTGGCATCTGTGTTTGAAATTCTTGACCGAAAATCACTAATTCCCAAGGCTGGGGATAACACTAGTGGCATTAAGTTGGAAAAGATGAGTGGTAAGATAGAGTTAAAGAATGTAGATTTTGCCTATCCAAGCAGGGCAGGGACACCAATTTTGCGCAAGTTTTGCTTGGAGGTGAAGCCAGGAAAAAGTGTTGGGCTTGTCGGAAAAAGTGGATGTGGAAAATCAACAGTGATAGGCTTAATCCAAAGATTCTATGATGTTGAGAGAGGTTCGGTCAAAGTGGATAACGTAGACATAAGGGAATTAGACATTCACTGGTACAGACAGCACACAGCACTAGTGAGCCAAGAACCTGTCATATATTCTGGCAGCATACGTGAGAACATTTTGTTTGGGAAGCAAGATGCAACTGAGAATGAAGTAGTTGAGGCTGCAAGAGCTGCAAATGCTCATGAATTCATATCATCACTGAAAGATGGATATGAAACTGAATGTGGAGAAAGGGGAGTGCAGCTATCAGGAGGGCAAAAGCAGAGAATAGCAATTGCAAGAGCCATAATTAGGAACCCAAAGATACTACTTTTGGATGAGGCAACAAGTGCATTGGATGTGCAATCAGAACAAGTTGTGCAGGAAGCACTTGATAGGACTATGGTAGGAAGAACCACCATTGTTGTGGCACATAGGCTTAACACTATCAAAGAGCTTGATTCGATTGCTTATGTGTGTGAAGGCAAGGTCCTCGAGCAAGGAACCTATGCTCAACTTAGGCACAAGAGAGGTGCCTTCTTCAACCTTGCCAGCCATCAAATCCAAACTTAG 3726 0.4321 MGSPRMDETETQKVEMRRKGRASIAIILRYADWIDVVLMLMGALGAIGDGMSTNILLLFASRIMNSLGYSNNQQSTKTYMAEVEKCSLYFVYLGLAVMVVAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQEATTSEIINSISKDTSLIQEVLSEKVPLFLMHSSSFISGVAFATYFSWRLALVAFPTLLLLIIPGMIYGKYLIYLSKSSVKEYGKANSIVEQALSSVKTVYSFTAEKRITGRYSDILCRTSRLGIKQGIAKGLAVGSTGLSFAIWAFIAWYGSRLVMYKGESGGRIYASGISFIMCGLSLGVVLPDLKYFTEASVAASRIFDMIDRIPLIDGEDTKGLVLDHMSGKLEFEHVKFTYPSRPDMVVLSDFTLQVEAGKTVALVGASGSGKSTAIALMQRFYDADEGVVRVDGVDIKSLQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKTDATMDEIVAAASAANAHNFIRQLPEGYETKIGERGALLSGGQKQRLAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVVSGGRIIETGTHNELMNRQNGHYANLAKLQTQLSMDEQDQNSELGALSAARSSAGRPSTARSSPAIFPKSPLPDEASNPSPVSHPPPSFTRLLFLNAPEWKQGLIGTLSAIAFGSVQPLYALTIGGMISAFFAKSHLEMMHRIRTYSLIFCSLSLASITLNLLQHYNFAYMGAMLTKRIRLRMLENILTFETAWFDEEQNSSGALCSRLSYEASMVKSLVADRLSLIVQTTSAVTIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSITKVLRLFDEAQEAPRKEARKKAWLAGIGMGSAQCLTFMSWALDFWYGGTLVEKREISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKSSTAVASVFEILDRKSLIPKAGDNTSGIKLEKMSGKIELKNVDFAYPSRAGTPILRKFCLEVKPGKSVGLVGKSGCGKSTVIGLIQRFYDVERGSVKVDNVDIRELDIHWYRQHTALVSQEPVIYSGSIRENILFGKQDATENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPKILLLDEATSALDVQSEQVVQEALDRTMVGRTTIVVAHRLNTIKELDSIAYVCEGKVLEQGTYAQLRHKRGAFFNLASHQIQT 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3902g00020 1241 MobiDBLite consensus disorder prediction 607 657 - -
Vium3902g00020 1241 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Vium3902g00020 1241 FunFam ABC transporter B family member 1 26 364 - -
Vium3902g00020 1241 SUPERFAMILY ABC transporter transmembrane region 664 978 IPR036640 GO:0005524|GO:0016020
Vium3902g00020 1241 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 338 - -
Vium3902g00020 1241 MobiDBLite consensus disorder prediction 607 638 - -
Vium3902g00020 1241 Pfam ABC transporter 1022 1168 IPR003439 GO:0005524
Vium3902g00020 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 603 IPR027417 -
Vium3902g00020 1241 Gene3D ABC transporter type 1, transmembrane domain 27 915 IPR036640 GO:0005524|GO:0016020
Vium3902g00020 1241 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 982 - -
Vium3902g00020 1241 Gene3D - 355 604 IPR027417 -
Vium3902g00020 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1001 1237 IPR003439 GO:0005524
Vium3902g00020 1241 ProSitePatterns ABC transporters family signature. 1140 1154 IPR017871 GO:0005524|GO:0016887
Vium3902g00020 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3902g00020 1241 PANTHER ABC TRANSPORTER B FAMILY 12 689 IPR039421 -
Vium3902g00020 1241 FunFam Putative ABC transporter B family member 8 645 986 - -
Vium3902g00020 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Vium3902g00020 1241 SMART AAA_5 392 584 IPR003593 GO:0016887
Vium3902g00020 1241 SMART AAA_5 1028 1220 IPR003593 GO:0016887
Vium3902g00020 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1238 IPR027417 -
Vium3902g00020 1241 FunFam ABC transporter B family member 4 355 612 - -
Vium3902g00020 1241 FunFam ABC multidrug transporter SitT 991 1239 - -
Vium3902g00020 1241 CDD ABC_MTABC3_MDL1_MDL2 1001 1238 - -
Vium3902g00020 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 964 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3902g00020 1241 Pfam ABC transporter transmembrane region 41 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3902g00020 1241 Pfam ABC transporter transmembrane region 678 947 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3902g00020 1241 CDD ABC_MTABC3_MDL1_MDL2 366 603 - -
Vium3902g00020 1241 Gene3D - 991 1241 IPR027417 -
Vium3902g00020 1241 Pfam ABC transporter 383 532 IPR003439 GO:0005524
Vium3902g00020 1241 SUPERFAMILY ABC transporter transmembrane region 27 349 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3902g00020 Vium-Chr3902 155420 164008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3902g00020 4 1231 Calmodulin-binding Proteins AT2G36910 42.506 0.0 967
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3902g00020 K05658 - gmx:100801088 2222.97