Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium38g00002 ATGGATTTCCTGCAATCTCCAGAAAATCAGATACTTCTCGGTGTGGCCGTGGCCGTAGTGGCTGTGGGGATTGGTGCTGTCTTTCTCTTTTCATCTAAGAAGCGCAAAGGTTGCTTGGATCCGGAGAACTTTAAACAGTTCAAACTTGTTAAGCGTTCACAGCTGAGCCATAATGTTGCAAAGTTCACATTTGCCCTCCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGGGGTAAAGATGCACAAGGTGAAGAGGTTATCAAACCGTATACCCCTACTACTTTGGATTCTGATGTTGGACATTTTGAACTAGTTATTAAGATGTACCCACAAGGTAGGATGTCTCACCATTTCCGTGAGTTGCGAGTTGGTGACTTCCTTGCTGTGAGAGGACCCAAGGGACGTTTTAAATACCAACCTGGTGAGGTTAGGGCATTTGGCATGCTTGCTGGAGGGTCGGGAATCACCCCAATGTTCCAAGTTGCTAGAGCTATATTAGAAAACCCTAATGACAAGACCAAAGTACATCTTATCTACGCCAATGTTACATATGAGGATATTCTTTTGAAGGAAGAACTTGATGGTCTTGCTTCTAACTATCCAGATCAATTCAAAGTATACTACGTCTTAAATCAGCCCCCGGAGGTTTGGGATGGTGGTGTTGGATTTGTGACTAAGGAGATGATTCAAGCACATTGCCCTGCTCCAGCCCCTGATGTTAAGATCCTGAGATGTGGGCCACCGCCTATGAACAAGGCCATGGCTGCAAACCTTGATGCTCTTGAATATGCTTCTGAGATGCAGTTCCAGTTCTGA 837 0.4504 MDFLQSPENQILLGVAVAVVAVGIGAVFLFSSKKRKGCLDPENFKQFKLVKRSQLSHNVAKFTFALPTPTSVLGLPIGQHISCRGKDAQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFRELRVGDFLAVRGPKGRFKYQPGEVRAFGMLAGGSGITPMFQVARAILENPNDKTKVHLIYANVTYEDILLKEELDGLASNYPDQFKVYYVLNQPPEVWDGGVGFVTKEMIQAHCPAPAPDVKILRCGPPPMNKAMAANLDALEYASEMQFQF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium38g00002 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 192 203 IPR001709 GO:0016491
Vium38g00002 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 154 173 IPR001709 GO:0016491
Vium38g00002 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 248 256 IPR001709 GO:0016491
Vium38g00002 278 Gene3D - 137 278 IPR039261 -
Vium38g00002 278 Gene3D Translation factors 37 136 - -
Vium38g00002 278 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 146 IPR017927 GO:0016491
Vium38g00002 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 34 278 IPR001834 GO:0016491
Vium38g00002 278 FunFam NADH-cytochrome b5 reductase 37 136 - -
Vium38g00002 278 CDD cyt_b5_reduct_like 47 278 - -
Vium38g00002 278 PRINTS Cytochrome B5 reductase signature 192 203 - -
Vium38g00002 278 PRINTS Cytochrome B5 reductase signature 248 256 - -
Vium38g00002 278 PRINTS Cytochrome B5 reductase signature 154 173 - -
Vium38g00002 278 PRINTS Cytochrome B5 reductase signature 73 84 - -
Vium38g00002 278 PRINTS Cytochrome B5 reductase signature 95 102 - -
Vium38g00002 278 PRINTS Cytochrome B5 reductase signature 131 145 - -
Vium38g00002 278 Pfam Oxidoreductase FAD-binding domain 47 145 IPR008333 -
Vium38g00002 278 FunFam NADH-cytochrome b5 reductase 136 278 - -
Vium38g00002 278 SUPERFAMILY Riboflavin synthase domain-like 38 147 IPR017938 -
Vium38g00002 278 Pfam Oxidoreductase NAD-binding domain 155 261 IPR001433 GO:0016491
Vium38g00002 278 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 134 273 IPR039261 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium38g00002 Vium-Chr38 28684 36109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium38g00002 2 278 NADPH P450 reductases AT5G17770 84.173 2.30e-170 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium38g00002 K00326 - gmx:100805390 521.546