Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium389g00022 ATGGGTTATATATGTGATTTTTGTGGAGACCAGAGATCCATGGTGTACTGCCGTTCTGATGCTGCATGCTTATGTTTGTCTTGTGATCGGAATGTTCATTCTGCTAATGCCCTTTCCAGGCGTCATTCACGCACCCTTTTGTGTGAGAGATGCAATTCACAACCTGCCTTTGTGAGGTGTGTTGAAGAGAAAATTTCTCTGTGTCAGAATTGTGATTGGTTGGGTCATGGAGTCTCTACATCTTCGACACACAAGAGACAAGGAATCAGTTGCTACTCTGGCTGCCCTTCAGCCGCGGAACTGTCTTCAATATGGTCATTTGTCTTGGATATCCCTTCCATTAGGGAGTCTACATGTGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAGCGAGAGTGTTGGAGTTCCACCTGGAAACGGGAATGTGTCTGTTTCAGATCAAGTTACTGATCTACCTGCTTTGGACAGGTCTTTCGTTGGTACATCTTCAATACCCGAGTCAAGCTCCGAAACCCGTAATCTGGACCAGCTACCTGGACCTGCCAATGAATGTCTGCCAAAGTTGTACTGTCCTGCTACAAAATGCCCTGCATTATGTGAAGATGACAATCTATATGATGATTTTGACATGGATGAAGTGGATCTAAATCTTGAGAACTATGAAGAACTTTTTGGTATGGCCCTCAGTCATTCCGAAGAGCTATTTGAAAACGGTGGAATTGATAGTTTATTTGGGACAAAGGACATGTCTGCCGGAGATTCCAGTTGTCAGGATGCTATTGCTGCCGAGGGGTCATCGGTTGGACTGGTCAATGCAACACAACCAGCTTGCAGCAACGCAGCATCTGCAGATTCCATTTTGAGTACTAAAACCGAACCGATTCTTTGTTTCACGGGGAGGCAAGCACAATCAAACCTTTCTTTTTCTGGCATTACCGGAGAAAGTAGTGCTGCAGACTATCAAGACTGTGGGGCTTCTTCCATGCTTCTCATGGGAGAACCTCCTTGGTTTGCTCCTTGTCCTGAGAATTCCTTACAATCTGCCAACCGCAGCAATGCTGTCTTGCGTTACAAGGAAAAGAAGAAGGCACGAAAGTTTGAAAAACAAGTGCGGTATGCCTCACGCAAGGCAAGGGCCGACGTGAGAAGGCGTGTGAAGGGCCGGTTTGTGAAAGCCGGCGACGTCTACGACTATGACCCTTTGAGCACAACCAGAAGCTGCTGA 1230 0.4618 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLGHGVSTSSTHKRQGISCYSGCPSAAELSSIWSFVLDIPSIRESTCEQELGLMSINENSESVGVPPGNGNVSVSDQVTDLPALDRSFVGTSSIPESSSETRNLDQLPGPANECLPKLYCPATKCPALCEDDNLYDDFDMDEVDLNLENYEELFGMALSHSEELFENGGIDSLFGTKDMSAGDSSCQDAIAAEGSSVGLVNATQPACSNAASADSILSTKTEPILCFTGRQAQSNLSFSGITGESSAADYQDCGASSMLLMGEPPWFAPCPENSLQSANRSNAVLRYKEKKKARKFEKQVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSTTRSC 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium389g00022 409 CDD Bbox1_BBX-like 47 89 - -
Vium389g00022 409 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vium389g00022 409 Pfam CCT motif 352 394 IPR010402 GO:0005515
Vium389g00022 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 396 - -
Vium389g00022 409 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Vium389g00022 409 CDD Bbox1_BBX-like 4 47 - -
Vium389g00022 409 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515
Vium389g00022 409 SMART bboxneu5 48 89 IPR000315 GO:0008270
Vium389g00022 409 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium389g00022 Vium-Chr389 305689 311779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium389g00022 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 56.635 2.52e-155 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vium389g00022 CCT 1.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium389g00022 - - pvu:PHAVU_006G005200g 747.273