Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium389g00015 ATGGCCGAAGCTTCAACAATCACCTTCTTTTCCACTCTCGTTCCCCCTTTCCAACCCAACATCCAGGTGTCTCACCGTCCCCTGAGTTTCCCACGGAAGGCCCAGGTTCGATGCTCAGTGTCCGCCGGTGCGACTCCCCAGAATACGGTGGCTTGGGGCTGCGAGATTGAGTCGCTGGAGAGTGCGTCGGCATTGCAGAATTGGCTGTCGAAATCGGGTCTTCCACCGCAGAAGATGGGGATAGATAGGGTGGAGGTGGGAGAGAGAGGACTTGTGGCTTTGAAGAACATAAGGAAAGGGGAGAAGCTGCTCTTTGTGCCTCCCTCTCTTGTCATCACTCCCAATTCAGAATGGAGTTGCCCTGAAGCTGGTGAGGTATTGAAAAGAAATTCAGTGCCAGATTGGCCTTTGCTTGCAACTTACCTCATAAGTGAAGCTAGCCTCATGGAATCTTCAAGATGGAGCAATTATATATCAGCCTTACCTCGTCAACCTTACTCGCTTCTTTACTGGTCACAAGCAGAGCTAGATCGCTACTTGGAAGCTTCGCAGATTAGGGAGAGAGCAACTGAAAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAATACCCTGATTTATTCCCTGATGAGGTGTTCAACATTGAGTCCTTCAAATGGTCGTTCGGTATTCTTTTCTCGCGCTTGGTTCGGTTACCCTCAATGGATGGACAGGTTGCATTGGTTCCTTGGGCAGATATGCTAAATCATAGCTGTGAGGTGGAGACATTTTTGGATTATGACAAACAATCAAAGGGAATTGTCTTCACGACAGATCGGCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCAAATGGGGAGCTTTTGCTATCTTATGGATTTGTTCCGAAGGAAGGTGGCAATCCCAGTGATTCAGTTGAGTTGTCACTGTCACTAAAGAAATCCGATGCATCCTACAAGGAGAAGTTAGAACTGTTGAAAAAATATGGATTATCAGCATCTCAGTGTTTTCCTATACAGATAACTGGTTGGCCATTGGAATTAATGGCTTATGCTTATTTAGCTGTCAGTTCTTCAAGCATGGCAGAAAATTTTGAAGAGATGGCTGCTGCAGCATCAAATAGTACCATCTCCAAGAAGGATTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTCATACTAGACAGCTGTGAAGCAAGCATATCAAAATACAACAAGTTCTTGCAGGCAAGTGGATCACTGGATTTAGATGTGACTTCTCCTAAACAACTCAATAGAAGGCTTTTTCTGAAACAGCTAGCTGTGGACTTGTGTAATAGCGAGCGAAGGATATTATTTCGTGCTCAATATATACTCAGAAGAAAACTGAGAGACATGAGGGCTGGTGAGTTAAGAGCCCTAACAATATTCAACGGTTTCCGGAAATTTTTCCAATGA 1479 0.4415 MAEASTITFFSTLVPPFQPNIQVSHRPLSFPRKAQVRCSVSAGATPQNTVAWGCEIESLESASALQNWLSKSGLPPQKMGIDRVEVGERGLVALKNIRKGEKLLFVPPSLVITPNSEWSCPEAGEVLKRNSVPDWPLLATYLISEASLMESSRWSNYISALPRQPYSLLYWSQAELDRYLEASQIRERATERINNVIGTYNDLRLRIFSKYPDLFPDEVFNIESFKWSFGILFSRLVRLPSMDGQVALVPWADMLNHSCEVETFLDYDKQSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGGNPSDSVELSLSLKKSDASYKEKLELLKKYGLSASQCFPIQITGWPLELMAYAYLAVSSSSMAENFEEMAAAASNSTISKKDLRYPEIEEQALQFILDSCEASISKYNKFLQASGSLDLDVTSPKQLNRRLFLKQLAVDLCNSERRILFRAQYILRRKLRDMRAGELRALTIFNGFRKFFQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium389g00015 492 Pfam SET domain 89 293 IPR001214 GO:0005515
Vium389g00015 492 SMART set_7 77 299 IPR001214 GO:0005515
Vium389g00015 492 SUPERFAMILY SET domain 61 310 IPR046341 -
Vium389g00015 492 FunFam Rubisco methyltransferase family protein 312 475 - -
Vium389g00015 492 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 60 429 - -
Vium389g00015 492 Pfam Rubisco LSMT substrate-binding 326 459 IPR015353 -
Vium389g00015 492 CDD SET_RBCMT 71 307 IPR044431 GO:0016279|GO:0018022
Vium389g00015 492 PIRSF RMT_SET 1 489 IPR011192 GO:0009507|GO:0030785
Vium389g00015 492 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 323 488 IPR036464 -
Vium389g00015 492 Gene3D - 312 477 IPR036464 -
Vium389g00015 492 ProSiteProfiles SET domain profile. 77 293 IPR001214 GO:0005515
Vium389g00015 492 Gene3D set domain protein methyltransferase, domain 1 32 306 - -
Vium389g00015 492 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 46 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium389g00015 Vium-Chr389 160823 167935 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium389g00015 138 262 NAC Transcription Factor Family AT3G56570 28.125 2.87e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium389g00015 SET 5.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium389g00015 - - gmx:100803319 858.981