Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3898g00005 ATGGAGAGGGTTGCTGAGCCGAAGTTACTTCCACGGAACTTGCCTATCCTTGTTGAGGTATCGAAAGCACACACATCTGCTGCAAGAGAGCCGGGTCAGAGACATAATCGGCAGGAGGTTTCTGGTGCTGCTGGGATTTCACTCAGAGAAGTGAATCAATTGTCCAAAACAAGGGATGTGCATGTCCCTCTTTCACATCTGGCCTCAATTAGAGAAGTGGCCCAGTTAACCAATGCACGAATATATTTGGTACAAGAAGATATGGGATTTGATGGTCGATCCTCTGAGGAGTCCCTCACCTTTGAGCCCACCATGACATGGAAGGGAAAGGGCTCCTCGCCAGAAGCTGAGGAGTTTGTGCCTGATGGTGATACATTGAAGGAAAGCAGCTATTCATTTGAGGATGGTGGTCCAAGTTTATTTGCTGGTGCTAGTCATCCCCCTGAGCCTGTTGATACAGATCTTATGAGAACCGTTTATGTACCGATAGGTCAAAACAAATCGGAGGCTGGTTGCTTGATCAAGAGCCTGCCCACAAAGGGCCCTTTTTTGGAAGATCTCTCAATTCGTGTTCCTGCAAAGAAACCAAATCCAGCTGTTCTTACCCCTGAGCAAAGTCTGGTTGAAGAAATAAATGGCATAGGGAACTTGGCATTTCTGGGTCCTCGGGCATCACAGAATACTGAGAACTCTCTCCTACCTCCTGATGCTGAGGAAAAAGAATGTGTTTGGGACGCTTCTTTGCCTCCAAGTGGCAATGTCAGTCCACTCAGCAGTATTGATAGTACTGGTGTTGTCACTGCGATGAGCATTGTTAATAGTTGTGCTAGTACATATCGGAGTGATGCAATGACTAGTGATGGCATGCTTAGTTTAGATAGAAACTGTGATAGTACTAAAGGGAGTGTAAGGGGGGATTCACTGGAGAGTGCAAAAACTAGTGCTAGCCGGGCAAGTGATAGCAGTGGCCTCAGCGATGACAGCAACTGGAGCAACATAACTGGTAGTGCCAATAAGCCTCACAAAGGAAATGATCCTAGGTGGAAGGCTATTCTTGCCATCCGATTGCGGGATGGAATTCTGGGCATGAGTCATTTTAGATTACTCAAACGTCTAGGATGTGGTGACATTGGAAGTGTATATCTTTCAGAACTGAGTGGAACTCGGTGTTATTTTGCAATGAAAGTTATGGATAAGGCATCCCTTGCAAGCAGAAAGAAGCTGACTAGAGCACAGACAGAGAGGGAGATATTGCAGTTGCTGGACCATCCATTTCTACCAACTTTGTATACTCATTTTGAGACTGACAGATTCTCGTGTTTGGTGATGGAATATTGTCCAGGCGGTGATCTGCACACTTTAAGGCAGCGGCAACCTGGGAAACATTTCTCAGAATATGCAGCACGCTTTTATGCTGCGGAGGTCTTGCTTGCTCTTGAATATCTTCACATGCTTGGAGTGGTTTACAGAGACCTTAAACCCGAAAATGTGTTGGTTCGAGATGATGGTCACATTATGCTATCAGATTTTGATCTTTCCCTCAGATGTGCCGTGTCACCTACTCTTATTAGATCATCCTATGACGGCGATCCTTCTAAACGGGCTGGTGGTGCATTTTGTGTGCAACCTGCATGCATTGAGCCATCATCAGTGTGCATCCAACCTGCATGTTTTATTCCTCGGTTGTTTCCTCAGAAAAACAAGAAGCTAAGGAAGCCAAGAGCTGATCCTGGATTGCCATCCAGCACCCTTCCAGAGCTTGTTGCGGAGCCTACTGCAGCTCGATCCATGTCCTTTGTTGGCACTCATGAGTACCTTGCCCCAGAAATTATCAAAGGAGAAGGTCATGGAAGTGCAGTTGATTGGTGGACTTTTGGAATTTTCTTGCATGAGCTGTTATATGGTAAAACCCCTTTCAAAGGGTCAGGAAACCGTGCTACACTTTTCAATGTAGTAGGCCAGCAGCTCAGGTTTCCCGAATCACCTGCAACCAGTTATGCCAGCAGGGATCTGATCCGTGGCTTGCTAGTGAAGGAGCCACAGCATCGTCTAGGGGTTAAAAGGGGTGCAACAGAGATCAAGCAGCACCCATTCTTTGAAGGCGTGAACTGGGCATTGATTAGGTGTAGCACTCCGCCAGAAGTGCCGAGACCGGTGGAAAATGAACTACCAGGGAAGGTTGGACCAGCTGATAATGCTGTTGGGCTTGGCAGCACTAGTAAGAGGATAGTTGGTACTACTACTGACAACATGAAGTCTGGGGGTAAATATCTGGACTTTGAGTTCTTTTAG 2292 0.466 MERVAEPKLLPRNLPILVEVSKAHTSAAREPGQRHNRQEVSGAAGISLREVNQLSKTRDVHVPLSHLASIREVAQLTNARIYLVQEDMGFDGRSSEESLTFEPTMTWKGKGSSPEAEEFVPDGDTLKESSYSFEDGGPSLFAGASHPPEPVDTDLMRTVYVPIGQNKSEAGCLIKSLPTKGPFLEDLSIRVPAKKPNPAVLTPEQSLVEEINGIGNLAFLGPRASQNTENSLLPPDAEEKECVWDASLPPSGNVSPLSSIDSTGVVTAMSIVNSCASTYRSDAMTSDGMLSLDRNCDSTKGSVRGDSLESAKTSASRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRLRDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRSSYDGDPSKRAGGAFCVQPACIEPSSVCIQPACFIPRLFPQKNKKLRKPRADPGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVENELPGKVGPADNAVGLGSTSKRIVGTTTDNMKSGGKYLDFEFF 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3898g00005 763 PANTHER FLIPPASE KINASE 1-RELATED 139 722 - -
Vium3898g00005 763 Pfam Protein kinase domain 596 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3898g00005 763 Pfam Protein kinase domain 367 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3898g00005 763 ProSiteProfiles Protein kinase domain profile. 366 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3898g00005 763 MobiDBLite consensus disorder prediction 291 339 - -
Vium3898g00005 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Vium3898g00005 763 Gene3D Phosphorylase Kinase; domain 1 364 449 - -
Vium3898g00005 763 FunFam serine/threonine-protein kinase D6PK-like 450 517 - -
Vium3898g00005 763 CDD STKc_phototropin_like 364 718 - -
Vium3898g00005 763 MobiDBLite consensus disorder prediction 24 44 - -
Vium3898g00005 763 Gene3D Transferase(Phosphotransferase) domain 1 595 716 - -
Vium3898g00005 763 FunFam serine/threonine-protein kinase D6PK-like 594 717 - -
Vium3898g00005 763 MobiDBLite consensus disorder prediction 290 343 - -
Vium3898g00005 763 Gene3D Transferase(Phosphotransferase) domain 1 450 517 - -
Vium3898g00005 763 SUPERFAMILY Protein kinase-like (PK-like) 347 720 IPR011009 -
Vium3898g00005 763 FunFam Serine/threonine-protein kinase D6PK-like 364 449 - -
Vium3898g00005 763 SMART serkin_6 366 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3898g00005 Vium-Chr3898 50003 54427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3898g00005 1 763 AGC Kinase Gene Family AT2G44830 66.582 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium3898g00005 Pkinase 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3898g00005 - - gmx:100792314 1397.1